Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4153g00019 ATGACTCTTGAAGATTTCTTTACGTTGACTGAAATGAAAGATGGCCTCACAGCCCCTTCTCGAGTGCAAGAGTTGGTCTCTGTAATGAAGAAGGAGCAAGATTGTGTTGTTAAAAATGCTGGTGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTGTTCAATTAGATGGACTTTGGTTCATAAACAGATGGTTAAAGGATGCCCAAAATTTGGGTGCGGATAATACAAATGATGGCTTCATTGAAGAATCAATTACTACAATGTTACGAGCAGTAGAAAAACTATATCTAGACAGTGAAAAGTCAATTTCATCTGGAATTTCAGTCACTGTTAATAACCTTCTTGGCCATCACAGCTCTAAAGTGCAGGATAGAGCAAGAGCATTATATGACCACTGGAATGGAGGTGGACTTGGAGATGCTGAACCACGTGATAATTCAGATCGGGATAGACTCAACAATGAGAGTGATAAGATTGCCAGGGAGGAAGGCCAGCCATCTTGTGTGAATGATGCTGGCAATGACAATCATCATGCATCTGAACTTGCTGGAGATGAAAAGTCTATATTGGGAGGCCCAAATAGTCAGCTACAAGAGAAAGTTACTAGTAATCAGACACAGAGTGTTGACAATGCACTCCAGCCCTCTCTAAGTTTGGACTGTGAAGATATCAAAGAGAGATCAAGCCATGTTAATAGTGTTTTGGCTTCTGCTCAAGAAGCTACCGTAAGTGAATGTGAGACCACATTGGCTGGGACCTCTACCTTACCTACCTCTAAACAAGGCAGTTTCAAAGGACAGCAAGATGATTTAGAGTTAAATGACTTGTCCAAAAAGGAGAAGCAAGATCAAGATGTTAATGGTCCTCCTGAAGAATTAAAATCATCAGATATCTCTACGGCATCTGCAAAGCCAGACCCTGAACCTGTTTCCACTGGTGATAGTGAAGCAAAAGCACTGGAATCTGTGAAAGAAGAACCTGCTTTAGAACATAATGTTGAAAGCAATGAAAATGTTGTTTGTCCAAAAAGAAGTGTTTCTGGTAGCATGAGAACGCCTGAATCTGATGGAATGAGTGAGATGGATGATTTCAGAGCCACAAGTTCTAGCAATCCACAGCTTCCCAAAGCATCAGAAAATGATGATGACAGTTGTTCAAGAATGTTGCCTGACTTGTCTGTCACTGGAAGTAACTTGGAAAAACCTGACATGTCTTTCACCAAATCAGAATACGTCATAGCAGTAAAGGAAAGCAAGGACCAAGAGTCTGATCAAGATGATGATACCTCAAATGGTTCTGATTCTTTTAATCAGAGCAAAGGTCCCAGAAGTCCTAACATTATTGACAAGAGTTCTGACATGGAAATTGAATATGGTAATGTTGATGCTTTAGAAGTTGCTCGACTAGTTGCCCAAGAAGTTGAGAGAGAATGTGTCAGCCCTGTAAAGGAAGGGAATGACCATGGTTCTAATTGTACCACAGATGGTTCTGATTCTTTTAAATGGCGAAATGGTCCCAAAAGCCCTAATATTATTGGCAAGAGTTGTGAAATTGAGCTTGAGTATGGTATGGTTGATGCTTTAGAAGTTGCCCGACAAGTTGCTCAGGAGGTTGAGAGAGAAGTTTCCAGCTCTTCAGAGAAAATCTCTGAAGGTGGAATTAGGCGGAGAGGCAGCCTTGATTCTGTAGGGAGAAAGGATGAAGTCACTCGTATCCAGCCTGAGGAAGTATCATCCAGGCAAAGCAACTCTGCTGAAGTGTGTTCGGAAGAGGTAGGACATATGACAGTTTTAGATAATGTTGAGGCCGGGCCAGATGACATGGACTCCTCGCAGGTGACTGAAGCAGCTCGTGACCCAGGAGGTAATTCAGAGAAAAGTCTCTTTGATCTCAATGAAGATGTTGGATCTGATGATATGGATGTTTCTGTAAATGCTATGCCTACTATGCCAATACCTGTTGTCTCTGCTTCAAAACCTGCACAGTCTTCTGGGTTACCAATGGCCCCTTTGCAGTTTGAGGGGACCCACGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAACTTCTGATAGCGAGAAGAATGTTTCTGTTGGTAGAAACTCTGACCTTTCCAAGCAGAGGCATTGTTGCCTGGATTTTGATCTGAATGTTGCTGAAGGTGAAGAAGGATTGGTAAAACAAGTTGGTGAATCTTCAGGCCTTCCTTCTGGCCAATCATCAGTGGAATTTAGTTCTAAAAGATCAAACAAGTTCGAATTGGATTTAAACAGTATCGGTGATGATGGTGATGTCCAACCTTCAAATCAGAGGATCGAGGGCCCACCCTTTTCTGGAAGAAATGGTTATTGGAGCCCATCACCTGCTTCTTCGTCGTCATCAATGCAACCTTCAGTACGGAACATTGATTTGAATGACAGACCATACTTTCAAACAGATTTAGTGGACCAGGGGCATAGTAAGTCATCTTCGATAACTGAACCATATAAACGGTCTAAACCGGGGGCTCCTGTTATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAATATGTTCCTCAAACTTTGTCGCTGCCAAATGGCAAGGCTATTGAGCCAGCAATGGATCTTCCATTATCAGGAGCAGGTGGCATTTTAGGAATGGGGCCCCCACTATCCTACAATCATTCAAATGCTTTTGGGTATAATGGACTGACCTCAGTGCCTGCTCTGTCTTTTTCGTCAGCCATGTACGGACCTTCTGGTGGCCCAGTTCCGTACATGGTAGACTCGAGAGGAACTCCAGTTGTGCCTCAGGTTGGGGGATCTTCGTCTACCGTCCTATCATCTTACACTCAGCCTCCATTTATCGTAAGCATGACTGGAACGCAGCTTGGTTTAAATGGGGTTGGATCTTCACATCCCAACTTTGATCTAAACTCCGGCTTCACGATTGATGGCCCCAACAGAGACAAGTTGACTGCAAGGCAATTTTTCTTTCCTGCTCAAGGCAGAGCCATTGAGGAGCATGTAAGGACCCTTCCACAGTCCTCTAGTTCTGGGGTTAGTGTGAAAAGAAAGGAACCAGACGGTGGTGCCTGGGAAACCTATCCACGTAGCTACAAACATCAGCAACCGCCATGGAAATAG 3198 0.4362 MTLEDFFTLTEMKDGLTAPSRVQELVSVMKKEQDCVVKNAGDATRQWAAVASTIAATENKDCLDLFVQLDGLWFINRWLKDAQNLGADNTNDGFIEESITTMLRAVEKLYLDSEKSISSGISVTVNNLLGHHSSKVQDRARALYDHWNGGGLGDAEPRDNSDRDRLNNESDKIAREEGQPSCVNDAGNDNHHASELAGDEKSILGGPNSQLQEKVTSNQTQSVDNALQPSLSLDCEDIKERSSHVNSVLASAQEATVSECETTLAGTSTLPTSKQGSFKGQQDDLELNDLSKKEKQDQDVNGPPEELKSSDISTASAKPDPEPVSTGDSEAKALESVKEEPALEHNVESNENVVCPKRSVSGSMRTPESDGMSEMDDFRATSSSNPQLPKASENDDDSCSRMLPDLSVTGSNLEKPDMSFTKSEYVIAVKESKDQESDQDDDTSNGSDSFNQSKGPRSPNIIDKSSDMEIEYGNVDALEVARLVAQEVERECVSPVKEGNDHGSNCTTDGSDSFKWRNGPKSPNIIGKSCEIELEYGMVDALEVARQVAQEVEREVSSSSEKISEGGIRRRGSLDSVGRKDEVTRIQPEEVSSRQSNSAEVCSEEVGHMTVLDNVEAGPDDMDSSQVTEAARDPGGNSEKSLFDLNEDVGSDDMDVSVNAMPTMPIPVVSASKPAQSSGLPMAPLQFEGTHGWKGSAATSAFRPASPRKTSDSEKNVSVGRNSDLSKQRHCCLDFDLNVAEGEEGLVKQVGESSGLPSGQSSVEFSSKRSNKFELDLNSIGDDGDVQPSNQRIEGPPFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVDQGHSKSSSITEPYKRSKPGAPVISILGAKVEVGRREYVPQTLSLPNGKAIEPAMDLPLSGAGGILGMGPPLSYNHSNAFGYNGLTSVPALSFSSAMYGPSGGPVPYMVDSRGTPVVPQVGGSSSTVLSSYTQPPFIVSMTGTQLGLNGVGSSHPNFDLNSGFTIDGPNRDKLTARQFFFPAQGRAIEEHVRTLPQSSSSGVSVKRKEPDGGAWETYPRSYKHQQPPWK 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4153g00019 1065 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 149 IPR035441 -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 376 393 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 1028 1065 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 703 723 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 804 822 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 171 227 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 778 822 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 332 346 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 444 460 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 352 368 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 404 418 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 496 520 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 693 723 - -
Vium4153g00019 1065 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Vium4153g00019 1065 Coils Coil 542 562 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 615 642 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 205 227 - -
Vium4153g00019 1065 ProSiteProfiles TFIIS N-terminal domain profile. 73 154 IPR017923 -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 292 466 - -
Vium4153g00019 1065 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 501 1065 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 554 603 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 500 518 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 589 603 - -
Vium4153g00019 1065 MobiDBLite consensus disorder prediction 554 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4153g00019 Vium-Chr4153 90192 98437 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium4153g00019 Med26 0.00031 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4153g00019 - - gmx:102667261 1649.8