Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4153g00001 ATGTTTCTTTTTATGAAGTTCCCTCCTTCTTTTTCTTCTCCTTCTCCTTCTTCACTCTTCCGTTTCATAGTATTATTTATAATAACAGTTTTGATTGTGTGTGAAAAAACAAGGGCAGTTGTGAAACTGCCACCAAATGTTTCAGTTCCTGCAGTGTTGGTGTTTGGAGATTCGATCATGGACACTGGCAATAACAACAACAATTTAGCAACAACAGCAAGGTGCAATTACCCACCATATGGTAAAGATTTTAAGGGAGGGATCCCTACTGGGAGATTCAGTAATGGAAAGGTTCCATCTGACCTTATAGTTGAAGAACTGGGCATAAAAGAGCTTCTTCCACCGTACGTGGATTCAAAGCTCGAACCCGGTGAATTGGCGACTGGTGTGTGCTTTGCATCTGGTGGCGCAGGATACGACCCTTTCACAGCACAATCATCGTTTACCATATCATTATCGGGTCAACTAGGGTTGTTCAGAGAATACATAGGGAAGTTGAAAGCGGCGGTCGGAGAAGAGAGAACCAAGTTCATCTTAAGAAACACTCTTTATATTGTGGTATTAGGAAGCAACGACATTTCCAACACATACTTTTTGACCCGTGTTAGACAACTGCAGTACCCTAATTTTTCTGCATATGCTGATTTTATGCTCTCCTCAGCTTCTACTTTCTTCAAGGAAATATATGGAGAAGGAGCACGGAGGATTGCAGTGTTCAGTGTGCCGCCACTTGGGTACTTGCCATCTCAGAGAACGATCGGAGGAGGAATACGAAGAGACGTTGTAGTGAAGATAAACGACGCCGTACAGATCTTTAACACCAAATTGTCAAAGCAACTCGAGTCTCTCAATCACGAGCTTCCAGATAGCAGAATGGTGTACGTTGATGTTTACAATCCTCTCCTTGACATCATAGTCAACTACCAAAAATATGGGTATAAAGTGGGAGACAGGGGGTGTTGTGGCACAGGGACAATAGAAGTGGTATTACTATGCAATCGTTTCACTCCATTATGCTCTAACGATTTGGAGTATGTGTTTTGGGACAGTTTTCACCCAACTGAAAGTGTTTATAAAAAGCTTATAAGCCCTGTTATTGGAAAATATTTGAACAAGTTCTTGTGA 1125 0.4169 MFLFMKFPPSFSSPSPSSLFRFIVLFIITVLIVCEKTRAVVKLPPNVSVPAVLVFGDSIMDTGNNNNNLATTARCNYPPYGKDFKGGIPTGRFSNGKVPSDLIVEELGIKELLPPYVDSKLEPGELATGVCFASGGAGYDPFTAQSSFTISLSGQLGLFREYIGKLKAAVGEERTKFILRNTLYIVVLGSNDISNTYFLTRVRQLQYPNFSAYADFMLSSASTFFKEIYGEGARRIAVFSVPPLGYLPSQRTIGGGIRRDVVVKINDAVQIFNTKLSKQLESLNHELPDSRMVYVDVYNPLLDIIVNYQKYGYKVGDRGCCGTGTIEVVLLCNRFTPLCSNDLEYVFWDSFHPTESVYKKLISPVIGKYLNKFL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4153g00001 374 SUPERFAMILY SGNH hydrolase 51 367 - -
Vium4153g00001 374 CDD SGNH_plant_lipase_like 50 359 IPR035669 -
Vium4153g00001 374 PANTHER GDSL ESTERASE/LIPASE EXL3 26 364 - -
Vium4153g00001 374 Pfam GDSL-like Lipase/Acylhydrolase 52 363 IPR001087 GO:0016788
Vium4153g00001 374 FunFam GDSL esterase/lipase APG 41 370 - -
Vium4153g00001 374 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 52 63 IPR008265 GO:0006629|GO:0016298
Vium4153g00001 374 Gene3D SGNH hydrolase 42 369 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4153g00001 Vium-Chr4153 9021 11704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4153g00001 46 366 Pollen Coat Proteome AT1G75910 39.628 8.60e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4153g00001 - - gmx:100776651 576.244