Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4146g00008 ATGATTGAGAGGTTGAAGATGGGTTCTTCCGATGATGGTGTTCTATCATTGGTTGTGTTTGTGGTTATTGGCATGGTGACATTAATGATCCCTGTCAATGCAAACCTCTCTCCTCATTTCTATGATAAAGTTTGCCCTCAAGCATTACCTGTCATAAGATCAGTGGTTCAAAGAGCTATTAACAGAGAACCTCGCATTGGAGCTTCTCTTCTGCGCTTGCATTTCCATGACTGCTTCGTCAATGGTTGTGATGGATCAATTCTGCTAGACGACACCAGAAACTTCATTGGCGAGAAGACAGCTTTTCCAAATAATAATTCAGCAAGAGGGTTTTCTGTGGTTGATGAAATCAAAGCAGCAGTTGACAAGGCCTGCAAACGCCCTGTGGTGTCATGTGCAGATATTTTAGCCATAGCAGCTCGTGATTCCGTTGCCATTTACGGGGGAAAACACTTTTGGTACCAAGTGTTGTTGGGTAGAAGAGATGCAAGAACTGCAAGCAGGGATGCTGCAAATTCCAATCTTCCTCCACCAACCTTCAGCTTCTCTCAGCTTGTTTCCAACTTCCAATCTCACGGATTGAATGTGAAGGACCTTGTGGCTCTCTCTGGAGGCCACACCATTGGCTTTGCAAGGTGCACTACCTTCAGAAACAGAATCTACAATGAATCCAACATTGACCCCAAGTTTGCAGCATCCTTGAGGAACATATGTCCTCGAAGTGGTGGAGACAATAACTTAGAAAAATTAGATGCTACTCCTGCAAGAGCTGACAGCAGATACTTCACAGATTTGCTGCAGAAAAAGGGTCTCCTCCATTCTGATCAAGAACTGTTCAAGGGACAAGGCAGAGAAAGTGACAAGCTGGTGCAGCTATACAGTAGAAGCCCTGTATCTTTTGCTAGAGATTTCAAAGCTTCAATGATCAAAATGGGTAACTTGAAGCCTCTTACTGGGAGTAAGGGAGAGATCAGATGTCACTGCAGAAGGGTGAATTAG 999 0.4414 MIERLKMGSSDDGVLSLVVFVVIGMVTLMIPVNANLSPHFYDKVCPQALPVIRSVVQRAINREPRIGASLLRLHFHDCFVNGCDGSILLDDTRNFIGEKTAFPNNNSARGFSVVDEIKAAVDKACKRPVVSCADILAIAARDSVAIYGGKHFWYQVLLGRRDARTASRDAANSNLPPPTFSFSQLVSNFQSHGLNVKDLVALSGGHTIGFARCTTFRNRIYNESNIDPKFAASLRNICPRSGGDNNLEKLDATPARADSRYFTDLLQKKGLLHSDQELFKGQGRESDKLVQLYSRSPVSFARDFKASMIKMGNLKPLTGSKGEIRCHCRRVN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4146g00008 332 SUPERFAMILY Heme-dependent peroxidases 35 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 ProSitePatterns Peroxidases active site signature. 67 78 IPR019794 GO:0004601
Vium4146g00008 332 FunFam Peroxidase 176 311 - -
Vium4146g00008 332 CDD secretory_peroxidase 35 331 IPR033905 GO:0004601|GO:0042744
Vium4146g00008 332 Gene3D Peroxidase, domain 2 176 311 - -
Vium4146g00008 332 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Haem peroxidase superfamily signature 150 162 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Haem peroxidase superfamily signature 130 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 Pfam Peroxidase 53 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 198 208 IPR019793 -
Vium4146g00008 332 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Plant peroxidase signature 197 209 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Plant peroxidase signature 129 139 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Plant peroxidase signature 45 64 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PRINTS Plant peroxidase signature 306 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 PANTHER PEROXIDASE 72-RELATED 32 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 FunFam Peroxidase 39 184 - -
Vium4146g00008 332 ProSiteProfiles Plant heme peroxidase family profile. 35 332 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00008 332 Gene3D - 39 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4146g00008 Vium-Chr4146 41900 44842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4146g00008 32 332 Peroxidase AT5G05340 58.553 3.78e-122 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4146g00008 K00430 - gmx:100811396 543.888