Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4146g00007 ATGATTTTTCATCTTCAATCTCTTCTTCTGATTTTTATGGCCACTTTGGTGCCAACATTTATGATCCCTACCTTTGCTCAGCTAAGTCATGATTATTATGACCAAGTTTGCCCTCAGGCATTGCCAATCATATACTCACTTGTAAAGGAGGCAATTCTTCATGAAAAACGCATCGGAGCATCCTTGCTGCGTTTGCATTTCCATGACTGCTTTGTTAATGGCTGTGATGGATCAGTGCTGCTAGATGACACACCTTTCTTCTTGGGGGAGAAGACTGCATTCGCAAATCTGAATTCAATCAGAGGATTCGAGGTGGTTGATAAAATCAAAGCAGCAGTGGATAAGGCTTGCAAACATCCTGTAGTATCATGCGCAGATATCTTGGCTGTAGCTGCTCGTGACTCTGTAGCCATATTGGGTGGTCCACAATATTGGTACCAAGTGTTACTAGGCAGAAGAGATGCAAGAAATGCAAGCAGGGATGCTGCGAATGACAATCTTCCAGCTCCATTTTTCAACTTTCAACAGCTTCTTGCTAATTTCCAAACTCATGGACTAAACCTCAAGGATTTGGTGGTCCTCTCCGGTGGCCATAGCATTGGATTAGCAAGGTGCATTAACTTCAGGGACAGGATCTTCAATGACACCAACATAGACCCCAAATTTGCTTCCACTTTGCGTGAGTCATGCCCTCGAAGAGGAGGAGACAATAGCTTAGCACCCCTTGATGCCACTCCTTCAAAATTTGACACCACATACTATAAATCTTTGTTGTACAAAAAGGGTCTCCTCCATTCTGATCAAGAGCTGTTCAAGGGTGATGGTTGTGAAAGTGACAGTTTGGTGAAACTATACAGCAATGANCATATCAAATTTTCATATAATTGGTACAAGTCAGAAGCTAATAGCAAAATTTGA 918 0.4216 MIFHLQSLLLIFMATLVPTFMIPTFAQLSHDYYDQVCPQALPIIYSLVKEAILHEKRIGASLLRLHFHDCFVNGCDGSVLLDDTPFFLGEKTAFANLNSIRGFEVVDKIKAAVDKACKHPVVSCADILAVAARDSVAILGGPQYWYQVLLGRRDARNASRDAANDNLPAPFFNFQQLLANFQTHGLNLKDLVVLSGGHSIGLARCINFRDRIFNDTNIDPKFASTLRESCPRRGGDNSLAPLDATPSKFDTTYYKSLLYKKGLLHSDQELFKGDGCESDSLVKLYSNXHIKFSYNWYKSEANSKI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4146g00007 305 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 ProSiteProfiles Plant heme peroxidase family profile. 27 299 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vium4146g00007 305 Gene3D - 31 167 - -
Vium4146g00007 305 FunFam Peroxidase 31 175 - -
Vium4146g00007 305 Gene3D Peroxidase, domain 2 168 299 - -
Vium4146g00007 305 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 CDD secretory_peroxidase 27 292 IPR033905 GO:0004601|GO:0042744
Vium4146g00007 305 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Vium4146g00007 305 Pfam Peroxidase 46 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 SUPERFAMILY Heme-dependent peroxidases 27 299 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 PANTHER PEROXIDASE 72-RELATED 26 299 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00007 305 FunFam Peroxidase 168 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4146g00007 Vium-Chr4146 35658 38865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4146g00007 26 296 Peroxidase AT5G05340 54.380 1.27e-102 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4146g00007 K00430 - gmx:100810852 426.402