Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4146g00006 ATCCACGTGGGAAAACTGCAGGGCTGTGATGGATCAGTGCTGCTAGATGACACACCTTTCTTCTTGGGGGAGAAGACTGCATTCGCAAATCTGAATTCAATCAGAGGATTCGAGGTGGTTGATAAAATCAAAGCAGCAGTGGATAAGGCTTGCAAACATCCTGTAGTATCATGCGCAGATATCTTGGCTGTAGCTGCTCGTGACTCTGTAGCCATATTGGGTGGTCCACAATATTGGTACCAAGTGTTACTAGGCAGAAGAGATGCAAGAAATGCAAGCAGGGATGCTGCGAATGACAATCTTCCAGCTCCATTTTTCAACTTTCAACAGCTTCTTGCTAATTTCCAAACTCATGGACTAAACCTCAAGGATTTGGTGGTCCTCTCCGGTGGCCATAGCATTGGATTAGCAAGGTGCATTAACTTCAGGGACAGGATCTTCAATGACACCAACATAGACCCCAAATTTGCTTCCACTTTGCGTGAGTCATGCCCTCGAAGAGGAGGAGACAATAGCTTAGCACCCCTTGATGCCACTCCTTCAAAATTTGACACCACATACTATAAATCTTTGTTGTACAAAAAGGGTCTCCTCCATTCTGATCAAGAGCTGTTCAAGGGTGATGGTTGTGAAAGTGACAGTTTGGTGAAACTATACAGCAATGATCCTTATGCTTTTGCCAAAGATTTTGGAGTTTCCATGATTAAGATGGGTAACTTGAAGCCTCTTACAGGGTCCTACGGAGAGATCAGATACAATTGCAGAAAAGTCAATTAG 777 0.4402 IHVGKLQGCDGSVLLDDTPFFLGEKTAFANLNSIRGFEVVDKIKAAVDKACKHPVVSCADILAVAARDSVAILGGPQYWYQVLLGRRDARNASRDAANDNLPAPFFNFQQLLANFQTHGLNLKDLVVLSGGHSIGLARCINFRDRIFNDTNIDPKFASTLRESCPRRGGDNSLAPLDATPSKFDTTYYKSLLYKKGLLHSDQELFKGDGCESDSLVKLYSNDPYAFAKDFGVSMIKMGNLKPLTGSYGEIRYNCRKVN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4146g00006 258 ProSitePatterns Peroxidases proximal heme-ligand signature. 124 134 IPR019793 -
Vium4146g00006 258 Gene3D Peroxidase, domain 2 102 237 - -
Vium4146g00006 258 FunFam Peroxidase 102 237 - -
Vium4146g00006 258 CDD secretory_peroxidase 7 257 IPR033905 GO:0004601|GO:0042744
Vium4146g00006 258 PRINTS Plant peroxidase signature 174 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Plant peroxidase signature 232 245 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Plant peroxidase signature 35 48 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Plant peroxidase signature 190 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Plant peroxidase signature 55 65 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Plant peroxidase signature 123 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 Gene3D - 6 258 - -
Vium4146g00006 258 PRINTS Haem peroxidase superfamily signature 76 88 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Haem peroxidase superfamily signature 56 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Haem peroxidase superfamily signature 124 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 Pfam Peroxidase 7 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 SUPERFAMILY Heme-dependent peroxidases 6 258 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 PANTHER PEROXIDASE 72-RELATED 7 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00006 258 ProSiteProfiles Plant heme peroxidase family profile. 1 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4146g00006 Vium-Chr4146 34474 35617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4146g00006 6 258 Peroxidase AT5G05340 55.859 4.53e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4146g00006 K00430 - gmx:100810852 394.815