Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4146g00005 ATGGATAAACANAAATCAGCTGGTGCAAATGTGAATTCTTTGAGAGGTTTTGAAGTAATTGATGACATCAAAACTAAAGTGGAGGCTGTTTGTCCCGGAGTTGTTTCTTGTGCAGATATTGTAGCTGTTGCTGCTCGTGATTCTGTTGTTGCATTGGGAGGTCCATCATGGAATGTTGGGTTAGGCAGAAGAGATTCAACCACGGCAAGTAAAGATGCTGCCACTAAGGATATTCCATCCCCACTTATGGATCTTAGTGCCCTTATATCTGCTTTTGCAAACAAGGGATTTAACACCAAGGAAATGGTAGCACTGTCAGGAGCTCATACAACAGGGCTAGCCAGGTGTCAGCTATTTAGAGGCAGGGTTTATAATGAAACAAGCATTGAGTCAAACTTTGCAACATCACTCAAGTCAAACTGTCCAAGCACTGGTGGAGACACCAACCTTTCCCCACTAGATGTCACCACAAGTGTTCTATTTGACAATGCTTATTTCAAGAATCTCATCAACCAAAAGGGGCTTCTGCATTCTGATCAACAGTTGTTTAGTGGTGGTTCTACAGATTCTCAGGTCACTGCCTATAGCAATGACCCTTCAGCTTTCTATGCAGACTTTGCTAGTGCCATGGTCAAAATGGGAAATCTTAGCCCCTTAACAGGGAAAAGTGGCCAAATTCGTACTAACTGCCACAAGGTTAATTAA 705 0.4255 MDKXKSAGANVNSLRGFEVIDDIKTKVEAVCPGVVSCADIVAVAARDSVVALGGPSWNVGLGRRDSTTASKDAATKDIPSPLMDLSALISAFANKGFNTKEMVALSGAHTTGLARCQLFRGRVYNETSIESNFATSLKSNCPSTGGDTNLSPLDVTTSVLFDNAYFKNLINQKGLLHSDQQLFSGGSTDSQVTAYSNDPSAFYADFASAMVKMGNLSPLTGKSGQIRTNCHKVN 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4146g00005 234 PRINTS Plant peroxidase signature 152 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Plant peroxidase signature 208 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Plant peroxidase signature 34 44 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Plant peroxidase signature 53 68 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Plant peroxidase signature 15 28 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Plant peroxidase signature 168 185 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Plant peroxidase signature 100 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 SUPERFAMILY Heme-dependent peroxidases 4 234 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 CDD secretory_peroxidase 5 233 IPR033905 GO:0004601|GO:0042744
Vium4146g00005 234 Gene3D - 4 234 - -
Vium4146g00005 234 Gene3D Peroxidase, domain 2 79 213 - -
Vium4146g00005 234 PANTHER PEROXIDASE 72-RELATED 3 233 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 Pfam Peroxidase 3 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 FunFam Peroxidase 79 213 - -
Vium4146g00005 234 PRINTS Haem peroxidase superfamily signature 35 52 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Haem peroxidase superfamily signature 101 116 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Haem peroxidase superfamily signature 53 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 PRINTS Haem peroxidase superfamily signature 154 169 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00005 234 ProSiteProfiles Plant heme peroxidase family profile. 1 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4146g00005 Vium-Chr4146 31911 33513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4146g00005 5 234 Peroxidase AT5G05340 62.500 7.58e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4146g00005 K00430 - gmx:100794128 431.024