Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4146g00004 ATGATTTTTCATCTTCAATCTCTTCTTCTGATTTTTATGGCCACTTTGGTGCCAACATTTATGATCCCTACCTTTGCTCAGCTAAGTCATGATTATTATGACCAAGTTTGCCCTCAGGCATTGCCAATCATATACTCACTTGTAAAGGAGGCAATTCTTCATGAAAAACGCATCGGAGCATCCTTGCTGCGTTTGCATTTCCATGACTGCTTTGTTAATGGCTGTGATGGATCAGTGCTGCTAGATGACACACCTTTCTTCTTGGGGGAGAAGACTGCATTCGCAAATCTGAATTCAATCAGAGGATTCGAGGTGGTTGATAAAATCAAAGCAGCAGTGGATAAGGCTTGCAAACATCCTGTAGTATCATGCGCAGATATCTTGGCTGTAGCTGCTCGTGACTCTGTAGCCATATTGGGTGGTCCACAATATTGGTACCAAGTGTTACTAGGCAGAAGAGATGCAAGAAATGCAAGCAGGGATGCTGCGAATGACAATCTTCCAGCTCCATTTTTCAACTTTCAACAGCTTCTTGCTAATTTCCAAACTCATGGACTAAACCTCAAGGATTTGGTGGTCCTCTCCGGTGGCCATAGCATTGGATTAGCAAGGTGCATTAACTTCAGGGACAGGATCTTCAATGACACCAACATAGACCCCAAATTTGCTGCCACTTTGCGTGAGTCATGCCCTCGAAGAGGAGGAGACAATAGCTTAGCACCCCTTGATGCCACTCCTTCAAAATTTGACACCACATACTATAAATCTTTGTTGTACAAAAAGGGTCTCCTCCATTCTGATCAAGAGCTGTTCAAGGGTGATGGTTGTGAAAGTGACAGTTTGGTGAAACTATACAGCAATGAACCTTATGCTTTTGCCAAAGATTTTGGAGTTTCCATGATTAAGATGGGTAACTTGAAGCCTCTTACAGGGTCCTACGGAGAGATCAGATACAATTGCAGAAAAGTCAATTAG 975 0.4287 MIFHLQSLLLIFMATLVPTFMIPTFAQLSHDYYDQVCPQALPIIYSLVKEAILHEKRIGASLLRLHFHDCFVNGCDGSVLLDDTPFFLGEKTAFANLNSIRGFEVVDKIKAAVDKACKHPVVSCADILAVAARDSVAILGGPQYWYQVLLGRRDARNASRDAANDNLPAPFFNFQQLLANFQTHGLNLKDLVVLSGGHSIGLARCINFRDRIFNDTNIDPKFAATLRESCPRRGGDNSLAPLDATPSKFDTTYYKSLLYKKGLLHSDQELFKGDGCESDSLVKLYSNEPYAFAKDFGVSMIKMGNLKPLTGSYGEIRYNCRKVN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4146g00004 324 Gene3D - 31 324 - -
Vium4146g00004 324 FunFam Peroxidase 168 303 - -
Vium4146g00004 324 CDD secretory_peroxidase 27 323 IPR033905 GO:0004601|GO:0042744
Vium4146g00004 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vium4146g00004 324 Gene3D Peroxidase, domain 2 168 303 - -
Vium4146g00004 324 FunFam Peroxidase 31 175 - -
Vium4146g00004 324 SUPERFAMILY Heme-dependent peroxidases 27 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PANTHER PEROXIDASE 72-RELATED 26 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Vium4146g00004 324 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 ProSiteProfiles Plant heme peroxidase family profile. 27 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4146g00004 324 Pfam Peroxidase 46 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4146g00004 Vium-Chr4146 27791 30799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4146g00004 26 324 Peroxidase AT5G05340 55.629 1.26e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4146g00004 K00430 - gmx:100810852 495.352