Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4145g00001 ATGTCGGTTGATTTGGACAACGTTTCCACAGTGTCAGGGGAAGCAAGCATGTCTTCCTCTGGCAATCAAACAAAACCTGCTCCCAAGAGAAAACGAAACCTCCCTGGCATGCCAGATCCTGAGGCAGAGGTGATTGCTCTGTCACCGAAGACGCTGTTGGCGACGAACCGGTTCGTGTGTGAGATATGCAGCAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCATCGGAGAGGTCACAATTTGCCGTGGAAGCTGAGGCAGAGGTCCACCAAGGAGGTAAGGAAGAGAGTGTACGTGTGTCCCGAACCCGCGTGCGTGCACCACGACCCTTCTAGAGCCTTGGGGGACTTGACGGGGATTAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAATGCTCCAAGAAATACGCCGTTCAGTCGGATTGGAAAGCGCACTCCAAAGTATGCGGCAATAGAGAGTATAAGTGCGATTGTGGAACCGTTTTCTCCAGGAGGGATAGCTTCATTACGCATAGAGCGTTTTGCGATGCGTTGGCCAAGGACGGGGCGAGATCTCACACTGTTGTTACCAAGGCTAATGAGGAGAATGATTCAATGGTTTTAACCGAGTCACCGCCGCCGGAGGGTGCGGCGGCTGCAGCCACCACCCCTGCGCAGTCAAACAGTGTCATATCTTCTGGTGTGCAGACACAGAACCCAGAGTTACCGGAAAGCAATCCCCCAGTCATTGAGGAGCCACAAGCTACTACTGCTATAAGTGGGAGCTCTGGCAGCAAAAATAACAGTAGTACCAATTGCTCGGCAAGCAATGTCGGTGCTACTAATAATAGTAATAGTAGTAGTGTGTTTGCAAGTTTGTTTGCTTCTTCAACATCTTCTGGGGCTCTACAATCTCAAACACCAGCATTCGGTAACTTAATTAGAAGCATGGGGCCTCCAGATCACCGTGCAGATATCACAGCTCCCTCTTCGTCTGAGGCCATATCCCTTTGCCTCTCCACCAGTAATGTCTCACCAATATTCGCAACAGGAGGGCAAGAGCACCGGCAGTATGCCTCGCCTCCGCAACCTGCCATGTCAGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCAGCCACAAATGCCTCTCTGCTTCGCGGGTTGGGCATTGTGTCATCATCTTCAGCTTCAACTCCATCAGGGCAGCAAAATGGCCTGCAATGGGGTCAGCCTCAGTTAGAATCTGAGAGTGTTTCGGTTCCTGCAGGGCTTGGACTTAGTCTTCCATGTGATGGTGATTCTGGACTGAAGGAATTGATGACGGGGACACCCTCCATGTTTGGTCCTAAACACACGACTCTTGATTTTCTAGGACTGGGGATGGCAGCTGGTGGAGGCTTATCTGCGCTCATCACATCTATCGGTGGTGGTTTGGATGTTGCTGCTGCAGCTGCAGCAGGAACCTTTGGTGGTAATGGGGAGTTTTCTGGCAAAGATATTGCAAGGAGGAGCTCTTGA 1527 0.5147 MSVDLDNVSTVSGEASMSSSGNQTKPAPKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPACVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGNREYKCDCGTVFSRRDSFITHRAFCDALAKDGARSHTVVTKANEENDSMVLTESPPPEGAAAAATTPAQSNSVISSGVQTQNPELPESNPPVIEEPQATTAISGSSGSKNNSSTNCSASNVGATNNSNSSSVFASLFASSTSSGALQSQTPAFGNLIRSMGPPDHRADITAPSSSEAISLCLSTSNVSPIFATGGQEHRQYASPPQPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSSASTPSGQQNGLQWGQPQLESESVSVPAGLGLSLPCDGDSGLKELMTGTPSMFGPKHTTLDFLGLGMAAGGGLSALITSIGGGLDVAAAAAAGTFGGNGEFSGKDIARRSS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4145g00001 508 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vium4145g00001 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vium4145g00001 508 MobiDBLite consensus disorder prediction 1 27 - -
Vium4145g00001 508 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vium4145g00001 508 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Vium4145g00001 508 MobiDBLite consensus disorder prediction 1 41 - -
Vium4145g00001 508 Gene3D Classic Zinc Finger 38 104 - -
Vium4145g00001 508 MobiDBLite consensus disorder prediction 196 283 - -
Vium4145g00001 508 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 467 IPR031140 -
Vium4145g00001 508 FunFam protein indeterminate-domain 12-like 37 105 - -
Vium4145g00001 508 Gene3D Classic Zinc Finger 112 190 - -
Vium4145g00001 508 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Vium4145g00001 508 SMART c2h2final6 134 154 IPR013087 -
Vium4145g00001 508 SMART c2h2final6 99 129 IPR013087 -
Vium4145g00001 508 SMART c2h2final6 58 80 IPR013087 -
Vium4145g00001 508 MobiDBLite consensus disorder prediction 221 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4145g00001 Vium-Chr4145 1149 4632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4145g00001 1 507 IDZ Gene Family AT5G66730 55.172 5.95e-175 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4145g00001 zf-C2H2 0.0088 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4145g00001 K25869 - gmx:100783947 728.013