Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4143g00010 ATGTTTCATTCCCAACGCTTCAAACCATTTTTTCTCTATCTGAAGTCACTCTCAAGAACCCCTCTTCAAACCCCACAACCCAACAATCTTTTCCCCTCGATACTCTCTCTGAAACACTCCTCAAATGCTTCACAGCAACATTCTTTCACGGTCTCCTACCTCGTAAACGACCGCGGGTTCTCCCCAGAAACCGCTCTGAAGGCTTCCAAATTCATTCAATTCGAAACCTCGGAAAAGCCCGACTCAGTCATCGCCTTCTTCAGAGACAACGGATTCAGCAACACCCAGATAAACAGCATCGTCAGAACAGCACCCAATGTTCTCACTTGCGACCCCCACAAAAGGGTTTTTCCAAAGTTCGAGTTTTTACTCTCCAAAGGGGCCTCACGCTCTGACATTGTGGAACTGGTGAGTAGGAGCCCCAGAATCCTTTACTGCAGCCTCGAGAATAACATTGTCCCTTCGTATGAACTGATGAGGAAGTTTTTTCAAACTGATAAGGAAACGATGGATTGCATACGCTCTTGTAGTCATTTCTTTGGTACTGATCGTGTGGTGAAGAATGTGAAACTTTTGGTTGATGATGGAGTCACTGATCGTGTACAAGCCTTTTTGTTACGCAGGAGAATTTCTATAATCTTGTGTTCTTCCTTGAAGAGGACTTTGGATGAGGTTAAGGAAATGGGGTTCGATCCTTCCAAGTTGAGCTTTGCCATCGCGCTGCTGGCGAAAACGACCATTCCGAAATCGCGATGGGAGAGGAAAGTTGATGCCTTTAAGAGATGGGGTTGGTCTGAAGAATTGGTTCTTAGAGTGTTTAGGAGGCAACCCCTCGTAATGTTGGTGTCCCAAGATAAGATTGATAGGATTATGAGATTTTGGGTTAAGCAATTAGGTTGGGACTATTTGGCTCTTACCAAGAAGCCAGAGATTTTTGGATTTAGTTTGGAGAGAAGAATCATTCCAAGGGCACATGTTGTCCAGTATTTACTCAAGAAAGGTTTGAGGAGTAAGAGTGCCAGCTTGATTACGCCATTTTCTGTTTCTGATAAGGTATTTATTGAAAACTATGTGATGCGTTTTAAGGAGGAGACAAGTGAACTATCAAAGCTGTACCAATTCAAAGACTAA 1131 0.4359 MFHSQRFKPFFLYLKSLSRTPLQTPQPNNLFPSILSLKHSSNASQQHSFTVSYLVNDRGFSPETALKASKFIQFETSEKPDSVIAFFRDNGFSNTQINSIVRTAPNVLTCDPHKRVFPKFEFLLSKGASRSDIVELVSRSPRILYCSLENNIVPSYELMRKFFQTDKETMDCIRSCSHFFGTDRVVKNVKLLVDDGVTDRVQAFLLRRRISIILCSSLKRTLDEVKEMGFDPSKLSFAIALLAKTTIPKSRWERKVDAFKRWGWSEELVLRVFRRQPLVMLVSQDKIDRIMRFWVKQLGWDYLALTKKPEIFGFSLERRIIPRAHVVQYLLKKGLRSKSASLITPFSVSDKVFIENYVMRFKEETSELSKLYQFKD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4143g00010 376 Gene3D Transcription termination factor 3, mitochondrial 182 370 IPR038538 -
Vium4143g00010 376 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vium4143g00010 376 SMART mt_12 203 231 IPR003690 GO:0003690|GO:0006355
Vium4143g00010 376 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Vium4143g00010 376 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Vium4143g00010 376 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Vium4143g00010 376 FunFam Mitochondrial transcription termination factor-like 148 365 - -
Vium4143g00010 376 Pfam mTERF 85 287 IPR003690 GO:0003690|GO:0006355
Vium4143g00010 376 Pfam mTERF 252 353 IPR003690 GO:0003690|GO:0006355
Vium4143g00010 376 PANTHER CGI-12 PROTEIN-RELATED 45 362 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4143g00010 Vium-Chr4143 21904 23513 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4143g00010 mTERF 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4143g00010 K15031 - gmx:102666739 541.576