Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4143g00009 ATGTTGAATAAACTTCTGTACTTGAAATGTGTCACTTCCACAGCAACATCACCTTACCCTTTTATCCACCACTACCCATTCCTCTTTTCTCTCTGTTTCTGCACTGCCACTTCAAATTCACGCTCATTTGCGGTATCCTACCTCATTGACAACTTTGGATTCTCTCCTGAATCTGCTTCCAAAACATCTAAGTCCTACAATATTTGTTTCCAGACCTCAGAAAAGCCCGAGACGGTGATCAGGTTCTTCAGAAATAACGGTTTCTCTAATATCCAAATAAACTATATGGTTAGAAGGTTACCATGGTTGCTTTCCTGTGACCCATGCAAAAGGGTAATGCCAAAGCTTGAATTTTTTCTCTCAAAGGGTGTTTCTAGCTATGAAATTGTTGACCTAGTGAATAAGTACCCTACAGTACTGGGTTCAAGCCTGAAGAATCAGATAGTTCCAAACTATGAATTGATATATAAGTTCTTGCAATCTGATGTGAAGACTATTGGTTGTATGCTTAATAATTCATTTTTCTGTCGGGGCGATCTACTAGCACACAACATCAGATTGTTGCTGGAGAATGGAGTGAGAGAATCGAACATTGCAAGATTGCTTGGGAACCGTAGTAAGGGGGTCTTTGGCTCAAATGATATCATTAAGTTGGTGAAGGAATTAAATGATTTGGGATTTGATCCTTCAAAAGCAACTTTTGCTATAGCGTTGAAGGCCAAGAAAGAAACGAGTCCTTCCCTGTGGAAGCAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCCTTGTCTGAAGCATTTAGGAGGCACCCTCACGTTATGTTGACATCTATTAAAAAAATAAATGCTGTGATGAACCTTTGGGTCAATCAGTTGGGAAGGGATGCTTTGGAACTTGTCCATTGTCCAAAGATTTTCGGTTTGAGTATGGAGAAGACAATCATTCCAAGGGCCCGTGTTGTCCAGCATTTACTTGCTAAAGGCTTGAGGAAAAGTGCCAACTTTGTTTATCCGATTTCTGTTTCTGAAAAGCTATTTCTTGCAAGGTTTGTGACATGTTTTAAGGAGGAATCATGTCAACTATTAAAGCTGTATCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCAGCATGGGGCAGTTCTCAAATTGTTAACTCATGA 1179 0.3995 MLNKLLYLKCVTSTATSPYPFIHHYPFLFSLCFCTATSNSRSFAVSYLIDNFGFSPESASKTSKSYNICFQTSEKPETVIRFFRNNGFSNIQINYMVRRLPWLLSCDPCKRVMPKLEFFLSKGVSSYEIVDLVNKYPTVLGSSLKNQIVPNYELIYKFLQSDVKTIGCMLNNSFFCRGDLLAHNIRLLLENGVRESNIARLLGNRSKGVFGSNDIIKLVKELNDLGFDPSKATFAIALKAKKETSPSLWKQKVDTFKKWGWSDEALSEAFRRHPHVMLTSIKKINAVMNLWVNQLGRDALELVHCPKIFGLSMEKTIIPRARVVQHLLAKGLRKSANFVYPISVSEKLFLARFVTCFKEESCQLLKLYQEKVSVQGKEEVGAAWGSSQIVNS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4143g00009 392 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Vium4143g00009 392 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Vium4143g00009 392 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Vium4143g00009 392 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Vium4143g00009 392 Pfam mTERF 250 339 IPR003690 GO:0003690|GO:0006355
Vium4143g00009 392 Pfam mTERF 81 286 IPR003690 GO:0003690|GO:0006355
Vium4143g00009 392 Gene3D Transcription termination factor 3, mitochondrial 172 366 IPR038538 -
Vium4143g00009 392 Gene3D Transcription termination factor 3, mitochondrial 41 171 IPR038538 -
Vium4143g00009 392 PANTHER CGI-12 PROTEIN-RELATED 40 359 IPR003690 GO:0003690|GO:0006355
Vium4143g00009 392 FunFam Mitochondrial transcription termination factor-like 144 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4143g00009 Vium-Chr4143 18648 20146 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4143g00009 mTERF 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4143g00009 K15031 - gmx:102663414 497.664