Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4143g00006 ATGGTTACAAAGGCACCGTGGTTGCTTTCTTGTGACCCCTGCAAAAGGTTATTGCCAAAGTTTGAGTTTTTTCTCTCAAAGGATGTTTCTAGCTCTGAAATTGTTGACCTAATAAGTAAGTACCCTAGAGTACTGCGTCCAAGCCTGGAGAATCATATAGTCCCAACCTATGAATTGATATATAAGTTCTTGCAATCTCATGTGAGGACTACTCGTTGTATGTTTGGTAATACATTTTACTCTTGCGGGGATCGTCTGGCGCACAACATCATATTGCTGCTAGAGAATGAAGTAAAAGAATCAAACATTGCAAGATTGCTTGGGAACCATAGTAAGGTGATCTTTGCCTCAAATGATATAATTAAGTTGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAAGCAACTTTTGTTATAGCGTTGATGGCCATAAAAAAAACAAGTCCTTCCCTGTGGAAGGAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCTGTGTCTGAAGCATTTAGGAGGCACCCTCACGTTATGTTGACATCTATTAAAAAAATAAATGCTGTGATGAACCTTTGGGTCAATCAGTTGGGAAGGGATGCTTTGGAACTTGTCCATTGTCCAAAGATTTTCGGTTTGAGTATAGAAAAGACAATCATGCCAAGGGCCCGTGTTCTCCAGCATTTACTTGCTAAAGGCTTGAGGAAAAGGGCCAGCTTTGTTTCTCCGATTAGTGTTTCTGAAAAGTTATTTCTTGCAAGGTTTGTGACATGTTTTAAGGAGGAATCATGTCAACTATTAAAGCTGTATCAGGAAAAAGTTAGTGTTCAAGGAAAAGAGGAGGTTGGTGCAGCATTGGGCAGTTCTCAAATTGTTAAATCATGA 894 0.396 MVTKAPWLLSCDPCKRLLPKFEFFLSKDVSSSEIVDLISKYPRVLRPSLENHIVPTYELIYKFLQSHVRTTRCMFGNTFYSCGDRLAHNIILLLENEVKESNIARLLGNHSKVIFASNDIIKLVKEVKDLGFDPSKATFVIALMAIKKTSPSLWKEKVDTFKKWGWSDEAVSEAFRRHPHVMLTSIKKINAVMNLWVNQLGRDALELVHCPKIFGLSIEKTIMPRARVLQHLLAKGLRKRASFVSPISVSEKLFLARFVTCFKEESCQLLKLYQEKVSVQGKEEVGAALGSSQIVKS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4143g00006 297 SMART mt_12 35 66 IPR003690 GO:0003690|GO:0006355
Vium4143g00006 297 SMART mt_12 1 30 IPR003690 GO:0003690|GO:0006355
Vium4143g00006 297 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Vium4143g00006 297 SMART mt_12 172 203 IPR003690 GO:0003690|GO:0006355
Vium4143g00006 297 SMART mt_12 104 133 IPR003690 GO:0003690|GO:0006355
Vium4143g00006 297 Pfam mTERF 154 254 IPR003690 GO:0003690|GO:0006355
Vium4143g00006 297 Pfam mTERF 2 133 IPR003690 GO:0003690|GO:0006355
Vium4143g00006 297 Gene3D Transcription termination factor 3, mitochondrial 78 271 IPR038538 -
Vium4143g00006 297 Gene3D Transcription termination factor 3, mitochondrial 1 77 IPR038538 -
Vium4143g00006 297 FunFam Mitochondrial transcription termination factor-like 49 266 - -
Vium4143g00006 297 PANTHER CGI-12 PROTEIN-RELATED 1 264 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4143g00006 Vium-Chr4143 13444 15266 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4143g00006 mTERF 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4143g00006 K15031 - gmx:102663414 364.385