Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00030 ATGAAGATGCAAGGCTGTGAGGTTGAGGCCATTGGCATAAACTACACCATCCACACACACAAATCGGAGCACCCTTTTAAAATCTTCAGCAAATCTGCACAACTTGATACTGAACAAGATGGTAAAGAGCCAGAAGGGGAAGCAGAAGCTGAACGAAGTTGCAGTGGAGTAAGGCATGTGCTGAAGAAAGTGAGTTTCCAAGCCAAACCATGGGAGATCCTAGCAATTGTTGGGCCAAGCGGAGCTGGCAAATCATCACTGCTTGAGATTCTAGCCGGCAAACATAACCCTCAAGGTGGTACTGTGTTGGTGAACCACAAGCCTGTGGACAAAGCTCAGTTCAGGAAGCTTTCAGGGTATGTGACACAAAAGGACACTTTGTTTCCTTTGCTTACAGTTGAAGAAACCCTGATGTTTAGTGCAAAGCTGAGGCTGAAGCTTTCTCAGGAGGAACTCTGCTCCAGGGTCAAGTCATTGATTAAGGAGCTTGGACTTGACCACGTTGCTGGCACTAGAATTGGCGATGATAGGGTTCGAGGCATATCTGGTGGTGAGAGGCGCAGAGTTTCCATTGGTGTTGAAGTCATACATGAACCAAAAGTGCTGATTCTTGATGAACCAACTTCAGGGCTTGACAGTACTTCAGCTTTGCAAATAATTGACATGCTTAAGGTCATGGCTGACACAAAAGGGAGAACTATAATCCTTAGTATCCATCAACCCGGGTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCCAATGGAAGTGTTTTGCACCATGGAACTGCTGAGTTGCTTGGTGTAAATCTAAGGTTGATCGGTTTGGAGCTTCCTCTTCATGTCAATGTAGTTGAATTTGCCATTGAGTCCATCGATACCATTCAGCAACAACAGACATGTGTTCCAGTTCAGGTGGAAACTCCAAGGCAATTTCCAGGGACAATGCAACAGAAAAAAATCGGTGATGAAGCTGGTGAGATTAGGAACGGTAAGTTTACCTTGCAACAGCTGTTTCAGCAATCCAAGGTAATTGATGAAGAATCCATCTTCGTTGGAATGGATTTCCCTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACCCATAGGTTTTCCAAGAACATATTTCGTACAAAAGAGCTATTTGCTTGTAGGACAATTCAGATGCTGGTTTCTGGGTTGGTTGTGGGATCCATCTTTTGTAACCTTAAGGATGATATAGAGGGAGCTTATGAAAGGGTGGGTCTATTTGCTTTCATATTAACGTTTTTGTTGTCAAGCAGCATAGAAGCTCTACCCATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAAACATCTAGTGGAAGCTACCGTGTGTCATCGTATGCAATTGCCAATGGCCTAGTTTACTTGCCATTTCTTCTCATCCTAGCCATTTTGTTCTCAATGCCCTTGTACTGGATTGTTGGTCTCAACCGGAATTTCTTGGCCTTTTTGCACTTTTTGTTGCTGATATGGCTGATTCTTTACACGGCCAATTCAGTTGTGGTGTGTTTTAGTGCTCTGGTGCCTAATTTTATTGTTGGGAATTCAGTGATTGCTGGTGTTATAGGGTCATTCTTCTTGTTCTCTGGGTACTTCATATCAAAGCAAGAAATTCCAAACTACTGGATTTTCATGCATTATATATCCTTGTTTAAGTATCCCTTTGAAGGGTTCCTGATCAACGAGTTCTCCAACTCGGGAAAGTGCTTGGAGTACATGTTTGGGGCATGTCTTAAGAGCGGAGAGGATGTCCTTGAAGAAGAAGGGTACGGGGGAGAGAGTAACAGATGGAAGAATGTTGGGGTCACTGTGTGCTTCATCTTGGTTTACAGGTTCATCTCTTATGTCATTCTTAGATACAGATGTTCCCAAAGGAGATTTGGCAAGGTTATCACCAACTAA 1947 0.4294 MKMQGCEVEAIGINYTIHTHKSEHPFKIFSKSAQLDTEQDGKEPEGEAEAERSCSGVRHVLKKVSFQAKPWEILAIVGPSGAGKSSLLEILAGKHNPQGGTVLVNHKPVDKAQFRKLSGYVTQKDTLFPLLTVEETLMFSAKLRLKLSQEELCSRVKSLIKELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHEPKVLILDEPTSGLDSTSALQIIDMLKVMADTKGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLGVNLRLIGLELPLHVNVVEFAIESIDTIQQQQTCVPVQVETPRQFPGTMQQKKIGDEAGEIRNGKFTLQQLFQQSKVIDEESIFVGMDFPCDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLVSGLVVGSIFCNLKDDIEGAYERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFSMPLYWIVGLNRNFLAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISKQEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGACLKSGEDVLEEEGYGGESNRWKNVGVTVCFILVYRFISYVILRYRCSQRRFGKVITN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00030 648 Gene3D - 50 302 IPR027417 -
Vium4142g00030 648 CDD ABCG_EPDR 51 264 - -
Vium4142g00030 648 FunFam ABC transporter G family member 5 46 306 - -
Vium4142g00030 648 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 282 IPR003439 GO:0005524
Vium4142g00030 648 SMART AAA_5 70 259 IPR003593 GO:0016887
Vium4142g00030 648 Pfam ABC transporter 61 209 IPR003439 GO:0005524
Vium4142g00030 648 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 628 - -
Vium4142g00030 648 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524|GO:0016887
Vium4142g00030 648 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
Vium4142g00030 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00030 Vium-Chr4142 282253 284596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00030 72 293 Calmodulin-binding Proteins AT2G36910 27.350 1.52e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00030 K05681 - gmx:100789722 1173.3