Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00028 ATGATGGCTTGTGGGAGTGTAAACCTTCCTCCTGGCTTTTGCTTCTCTCCAACTGATGAAGAACTTCTCCTTCACTTTCTTTATCCAAAAACCTCTCTGCCATGCCATCCCAACATCATTCCAGACCTTGACCTCTCTCTGCAGGATCCATGGCACTTAAATGGTAAAGCGTTGTCAAGTGGAAATCAACACTATTTCTTCAGCAGAGCGAAGGAAAACAGATCCACGGAAAATGGGTATTGGAAGGAAATAGGACTGACAGAAGCAATAGTATCATCTGCATCTGAAAAAGTGGGGTTGAAGAAGTACCTTGTGTTCAACCTTGGTGAAGCTCCACAAGGCACTGAAACAAGTTGGTTCATGCAAGAGTATCATATTTGCTCATCCAGTTTTACCACTGCATCTTGTGGAACTACTCGAGGAAGAAGAAAATCTGATCAGTGTAGGAGTAAATGGGTTTTGTGCAAAGCCTATGAGAAGAAAAGTTGTGAAGGGCAACAAGGTGTAAATTGTGAGAAGGATGAGAATGACAGTGGAACTGAGCTTTCATGGCTAGATGAATTTTATATGTCATTAGATGATGACCTTGAAGAAGTTATGAGCCTTCCAAATTAG 615 0.4179 MMACGSVNLPPGFCFSPTDEELLLHFLYPKTSLPCHPNIIPDLDLSLQDPWHLNGKALSSGNQHYFFSRAKENRSTENGYWKEIGLTEAIVSSASEKVGLKKYLVFNLGEAPQGTETSWFMQEYHICSSSFTTASCGTTRGRRKSDQCRSKWVLCKAYEKKSCEGQQGVNCEKDENDSGTELSWLDEFYMSLDDDLEEVMSLPN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00028 204 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Vium4142g00028 204 Pfam No apical meristem (NAM) protein 10 126 IPR003441 GO:0003677|GO:0006355
Vium4142g00028 204 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Vium4142g00028 204 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Vium4142g00028 204 PANTHER NAC TRANSCRIPTION FACTOR 56 9 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00028 Vium-Chr4142 263341 264469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00028 2 164 NAC Transcription Factor Family AT1G61110 38.728 2.27e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4142g00028 NAM 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00028 - - gmx:100779578 365.54