Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00022 ATGGCCTCATTGATTGATTTCACAGAACCAGTACCATTAATAGATCCATATAAAAGCAGGCCTTTATTTTCTGTTGGAGGCATTGGAGAAGAAGATGAAAATGGGGTGCAGTATTGTGGGTGTGAAAAGGGAATTGGAGGTAATGAGGAAGGTGTCGATGCAACAAATGGCGATGGGGAAGATGTAGTTGTAGCATCAACACCTAATTGGGTAGGTATGTTGACAACAATTGGGGATATGGAGGAAGGTATTGGTGTAGGAGTTGTGGGTGAAAAATTTATCTTTTCCACTGGAGACAAACTCTATTTCTTCTTTCTTCTTGAGAATCTTCAGATTCTTTCCATGACCGAGTCTAAAAACATCATTCCTCCCCTATTCAGATGTCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCTGGTAACCTCACTTGTCCGGTCACAATGCAAAAGCTTCACGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTCCCTTATTCGACCCTGCCAACCCTGAAACTTCAACTATTGAATCCTTAGCTTATCTGAAGCGTACCCTTGAATCCCATGAAAGCAGCTTAAAAACCAAGCTTCAAGCACTCACCAAAATCAGTCTTTTATCTGATGAGTATTGCTCCTTTAACAAATCATGTTTCCTCCAATTGAACTTCTTGCCACTGCTTCTTGAACTAGTTTTTGGAACTCAAGTATCAATAGATCACATGGACTTCATAGAGCTGGCACTTTGTTGCATTCAGAAATTGCTGCCACTCGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAGCCATGTTTGTGCTACTAATTGAAAAGGGTACTAACTCAGTAAAGACTAGTTTGTGCCGTGTTATAGAGTCAGCATCATGGTCATCTGAGACAGAAGATTTGTGCTATATTCTTGGAAATTGTCCCAAACTAGTACACGAGATTGTTGAAGTTGTTAACCAAAATTATGAAGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTGTGTTCCTTGCAATCCAATAGAGAGAGTTTGGTGAGAGGAAGAGCAATAGAAGGTATGATGAGATACATCTCATCAGAAAGAAGAGAGCTGACCCCACTGGCAGTGAGAACAGTTGAGAAACTTATGGGGCTGGAAAGTGCTAAAGTGGCATTGGTGAACCACCCTAATGGTGTTGTGACTTTGGTTAATATGGTTTTCAAGGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAGACAGACAGCCATTGAAAGTGGAGTTTTGACTAGGTTGTTGTTGCTCCTGCAGAGTCAGAGTAGTTACACAACAAAATCAAAGGCAAGAATGCTACTCAAATTGCTAAGATCAGAGCCAAAGCAGAAATAG 1515 0.4139 MASLIDFTEPVPLIDPYKSRPLFSVGGIGEEDENGVQYCGCEKGIGGNEEGVDATNGDGEDVVVASTPNWVGMLTTIGDMEEGIGVGVVGEKFIFSTGDKLYFFFLLENLQILSMTESKNIIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTIESLAYLKRTLESHESSLKTKLQALTKISLLSDEYCSFNKSCFLQLNFLPLLLELVFGTQVSIDHMDFIELALCCIQKLLPLGSLEPLNMIKDGSKLAMFVLLIEKGTNSVKTSLCRVIESASWSSETEDLCYILGNCPKLVHEIVEVVNQNYEVSGDAIKAMSALCSLQSNRESLVRGRAIEGMMRYISSERRELTPLAVRTVEKLMGLESAKVALVNHPNGVVTLVNMVFKVSDQECSESAVEVLLVVCGEFERARQTAIESGVLTRLLLLLQSQSSYTTKSKARMLLKLLRSEPKQK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00022 504 ProSiteProfiles U-box domain profile. 121 195 IPR003613 GO:0004842|GO:0016567
Vium4142g00022 504 PANTHER WDSAM1 PROTEIN 119 500 IPR045185 GO:0061630
Vium4142g00022 504 Gene3D - 303 504 IPR011989 -
Vium4142g00022 504 CDD RING-Ubox_PUB 123 170 IPR045210 -
Vium4142g00022 504 SMART Ubox_2 125 188 IPR003613 GO:0004842|GO:0016567
Vium4142g00022 504 SUPERFAMILY RING/U-box 122 190 - -
Vium4142g00022 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 193 IPR013083 -
Vium4142g00022 504 SUPERFAMILY ARM repeat 209 501 IPR016024 -
Vium4142g00022 504 FunFam RING-type E3 ubiquitin transferase 122 193 - -
Vium4142g00022 504 Pfam U-box domain 122 190 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00022 Vium-Chr4142 220917 231645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00022 122 481 U-box Gene Family AT3G19380 29.178 8.68e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00022 - - vum:124836871 953.74