Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00018 ATGCCGGCGTGGTGGAGTAGGAAGTGGAGCAGGAGCAAGGAGGAACAGGAGGCCGAGGAGGAGGAAGAGGAAGAGCCACGTGGCGGGTTTCAGTTGAGTTTCTTGAAATCTCCGGTGGCCGTTAGGAGGGGTGACGTCAGCAAGGGAAAAAGAAACAAGAAGAAGCCGAAGAGCTTCGACGACAAGCTGAAAGGGGTTCCGTTGCCTCGTCCTACTCACAGTCACAGCGATCAAATTCAAACGTTTGGATCTCTATCGGTGTCGGGTTCCAGCGTCAGCTCATCCACCTCCTTCGACGATCACCCAATTTCGCCTCACTTTAATGCCAACAGAGGACAAGATGAGGTGAGGTTCAATGTGAGGTCAAAAAGTCCTGGTCCTGGGTCAAGAGGGCCTACTAGTCCTACCTCACCGCTTCATCCAAGGTTGCATGCTTTGAGTCTTAACTCTCCTACGGGGAGGCAAGACGAGGGAAGGAGTGAATGTCATCCGTTGCCTCTTCCTCCTGGTTCTCCAACTAGTCCTTCTTCTGTGCTTTCCAGTTCCATCACACGACCAAATGGACTGTTGGAAAATGCTACAAGCAATGTGTCCAAGTGGAGAAAAGGAAAGCTTCTAGGACGAGGAACATTTGGGCACGTGTATCTGGGATTCAATAGTGAAAATGGGCAGATGTGCGCAATAAAAGAAGTCAAGGTTGTCTCTGATGATCAAACATCAAGAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTAAATCAGCTTTCGCACCCTAATATTGTTCAATACTATGGGAGCGAACTGGTAGAAGAATCACTTTCCGTATTTTTGGAATTTGTCTCTGGTGGTTCCATCCAGAAATTACTTCAGGAGTATGGTCCATTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGCAAGAAATACCGTACACAGGGATATCAAAGGGGCAAACATACTAGTTGATCCTAATGGTGAAATCAAATTGGCCGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCTAAACCTCCTTGGAATCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCTGAGCATCTCTCCAATGATGCAAAGAATTTCATCAAGTTATGCTTACAAAGAGACCCATCGGCTCGCCCGACGGCCCAAATGTTACTAGACCAGCACCCGTTCATTCAAGATCAATCAGCAACAGAAGCTGCAAATGTCAGCATAACCAGAGAAGCTCTACCTTACATGTTTGATGGAAGCCGGACACCGCCTGTGTTAGAGTCCCATTCGAACCGAACAAGTATAACTGCGTTTGATGGAGATTATGCATCAAAGCCAGCTCTTGCAGCCCCACGTGCATCAAGAAGTCCAAGAGATAACACAAGAATGATCCTATCTTTACCGGTATCTCCCTCTTCAAGTCCATTGCGACGGTATGGGCCAATGCACCAGAGCTGTTACTTTTCACCTCCTCATCCAGCTTACACAACAATGGGACAAAGTAGTTACACTTTGAATGACGTATGCTCGTATCCCATGAGGTCAAATGCACCGTTGACTCTTGATCCTTGGCATGAAACATCTCGGTTCAAAGCCAATACACCACCTGGTGGATCTCCAAGAATGAGACTCATTTGA 1824 0.46 MPAWWSRKWSRSKEEQEAEEEEEEEPRGGFQLSFLKSPVAVRRGDVSKGKRNKKKPKSFDDKLKGVPLPRPTHSHSDQIQTFGSLSVSGSSVSSSTSFDDHPISPHFNANRGQDEVRFNVRSKSPGPGSRGPTSPTSPLHPRLHALSLNSPTGRQDEGRSECHPLPLPPGSPTSPSSVLSSSITRPNGLLENATSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSRECLKQLNQEINLLNQLSHPNIVQYYGSELVEESLSVFLEFVSGGSIQKLLQEYGPFKEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPSARPTAQMLLDQHPFIQDQSATEAANVSITREALPYMFDGSRTPPVLESHSNRTSITAFDGDYASKPALAAPRASRSPRDNTRMILSLPVSPSSSPLRRYGPMHQSCYFSPPHPAYTTMGQSSYTLNDVCSYPMRSNAPLTLDPWHETSRFKANTPPGGSPRMRLI 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00018 607 SUPERFAMILY Protein kinase-like (PK-like) 198 531 IPR011009 -
Vium4142g00018 607 Gene3D Transferase(Phosphotransferase) domain 1 197 478 - -
Vium4142g00018 607 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 42 466 - -
Vium4142g00018 607 FunFam Mitogen-activated protein kinase kinase kinase 198 481 - -
Vium4142g00018 607 MobiDBLite consensus disorder prediction 1 187 - -
Vium4142g00018 607 MobiDBLite consensus disorder prediction 54 68 - -
Vium4142g00018 607 CDD STKc_MEKK1_plant 199 457 - -
Vium4142g00018 607 ProSitePatterns Protein kinases ATP-binding region signature. 206 229 IPR017441 GO:0005524
Vium4142g00018 607 ProSiteProfiles Protein kinase domain profile. 200 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4142g00018 607 Pfam Protein kinase domain 201 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4142g00018 607 MobiDBLite consensus disorder prediction 73 103 - -
Vium4142g00018 607 SMART serkin_6 200 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00018 Vium-Chr4142 192886 198641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00018 1 520 MAP Kinase Kinase Kinase AT1G53570 57.749 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium4142g00018 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00018 K04421 - gmx:100787064 915.22