Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00017 ATGGCGGGGAAACTGGCAAAGGCAGCTTATGATGCAAAGATGTTGAAGCTTCTGAGAGAGTACAGTCAGGTGCTGGTGGTTTCATCTGACAATGTGGGTTCAAATCAGCTTCAGGGCATACGAAGGGGACTCCATGCTGATTCAGTTGTGGTGATGGGAAAGAACTCCCTGATGAAACGCTCTATCATCTTGGATGCTCAGAAGACTGGCAACAAGGCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGCGACATAAGGGAGGTCAGCGAACAGATTGCCAAGTACAAGGTTGTTCAACCTATTCTAATGTGTCCCAAGTATATGTCACATGACACATACCAGAATTGTTCCTATATGCAATCCGGGCAGTTACCTTTGGGCCTTACATGTTGTAATCAGCAGCAGTCTTCGCAGGTTTCTGAGCCTTTTCTTGTATGCTCAAAATTCCAGCCACACCAACATTGTTTCATGATGAGATCAAGGCAGTTCTTGATGACAAGTATATGGTCTCCTCTTCTCCTTTTGGCTGGCAACTTGTGA 567 0.455 MAGKLAKAAYDAKMLKLLREYSQVLVVSSDNVGSNQLQGIRRGLHADSVVVMGKNSLMKRSIILDAQKTGNKAFLNLVPLLVGNVALIFTKGDIREVSEQIAKYKVVQPILMCPKYMSHDTYQNCSYMQSGQLPLGLTCCNQQQSSQVSEPFLVCSKFQPHQHCFMMRSRQFLMTSIWSPLLLLAGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00017 188 FunFam 60S acidic ribosomal protein P0 4 135 - -
Vium4142g00017 188 SUPERFAMILY Ribosomal protein L10-like 7 105 IPR043141 -
Vium4142g00017 188 Gene3D - 4 136 IPR043141 -
Vium4142g00017 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Vium4142g00017 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 6 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00017 Vium-Chr4142 177026 178419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00017 7 109 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 66.990 2.09e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00017 K02941 - mnt:21409050 157.918