Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00012 ATGGCTGTATCGAGATTGAAACCGGGGTTTCGGTTCCACCCCTCGGGTGTCGAGTTGGTTGTGTACTTTCTGAAAAGGAAAGTGATGGGGAAAAAGTTCTTTGGTGGTGCCATTGCTGAACTTGACATTTACAGATATGCTCCATGGGATCTCCCAGCTAAGTCTTGTCTAAGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCACTGGAGAAGAAATATGGCAGTGGGAGTAGGATCAAGCGCGCTACTGAAATTGGGTACTGGAAAGCTACTGGGAGGGATAGACCTGTTCAGTACAATAATAAAACGGTGGGGATGATTAGAACACTGATATTTCACAAGGGTAAATCGCCTAAAGGTGAACGAACTAATTGGGTTATGCATGAGCATAGGCTTGAAGATAAGGACCTTGCTGACAAAGGAATTGCACAGAATTCTTATGTAGTCTGCAAGGTATTTGAAAAGGAAGGTCTTGGTCCCAGGAATGGGGCGCAATATGCAAGGCCATTTAATGAGGAAGAGTGGAGCGATGAAGAACTGGAAATCCCTTGTACTGCTTCAACTGCACCAGTTCCCATCTTGCCTATGACATCCGATGCTTCTGTCCCAAAGGACAATTCCGTCCCTGCTAGTGGATGTACATCATGTCTATCAAGATCAATGCCTTTACCTGGAACCGCGGATCCTTCTGATCCAAATGATCAAGTTGTTAACAATGATGATGAAGATATTTTACGGATGAATGATATTTCTGAAGATGGTGACAGATTGTTTGAGAAACCTGATAATGATCAAGAAAACATTGCTGGGGGTGTACCACCTTTAGCCGAATTATTCGTGGGCTTGGATGCCTACTTGGATGCTTATCTTGCTGGTATATCCTCTGGCCAGAATGCTGAATTTAGCACAAACGGAATGGTTACTACAGATGATGTCTGGAGCTTGGACTTCATAGAGTTATCTGATCTAGACATCTCATTGGTCTAG 990 0.4394 MAVSRLKPGFRFHPSGVELVVYFLKRKVMGKKFFGGAIAELDIYRYAPWDLPAKSCLRTGELEWYFFCPLEKKYGSGSRIKRATEIGYWKATGRDRPVQYNNKTVGMIRTLIFHKGKSPKGERTNWVMHEHRLEDKDLADKGIAQNSYVVCKVFEKEGLGPRNGAQYARPFNEEEWSDEELEIPCTASTAPVPILPMTSDASVPKDNSVPASGCTSCLSRSMPLPGTADPSDPNDQVVNNDDEDILRMNDISEDGDRLFEKPDNDQENIAGGVPPLAELFVGLDAYLDAYLAGISSGQNAEFSTNGMVTTDDVWSLDFIELSDLDISLV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00012 329 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Vium4142g00012 329 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Vium4142g00012 329 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vium4142g00012 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 208 - -
Vium4142g00012 329 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00012 Vium-Chr4142 140497 144189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00012 1 258 NAC Transcription Factor Family AT5G64060 51.698 2.30e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4142g00012 NAM 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00012 - - vra:106770001 655.981