Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00004 ATGGACACCAACCAGAACACCACCACAAGTGCATTCACAAATGTGAACACCACTTGGAATCTTGAAAAGATGGAAACAAACGAACAACATCAACATCATGACCATATTATTCTCCAAGTTCAAGACCCTCTTGCTTCTGGGATTTGGTCCAACAACTACCCCCACAGTCACAACCCCAACCTTCTTCAAATGCATCAAACACCCCCCACGACAACCTCGTCCGTTGTGGCCCCACCCTCCTCCTCGGGGTTCCTTGGAGACATACTGGGTGTTCACAGCATGGAAGAAGACGAGGAGCCGGAAGAAGAGCTGGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCGGTGGACATCGACCCCGCCACCATCCGTAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGGGGAACCAAAATGGACACTGCTTCAATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTTCAATCCATTCCTCACCCTTCCCAGCCACCACAATGCATTGGTTTTGCCACCACAAACGCTAGCACCTTGCTATTAGCCCCTTCCTGTGATTGGTCTTTTGCACCAAACGTGTTACTCAGCTCCACCGCCGTGACCGCAGCCACGGCCTCTTCCTCCTCGATGGACATGCCGGCGGGACTCGGATTCGACGGCCATGGCCATGGTTGTGACGGTTCCTCCAGCTTTAACCAGCACGAGGTAATCAGTGAATAA 831 0.5199 MDTNQNTTTSAFTNVNTTWNLEKMETNEQHQHHDHIILQVQDPLASGIWSNNYPHSHNPNLLQMHQTPPTTTSSVVAPPSSSGFLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNASTLLLAPSCDWSFAPNVLLSSTAVTAATASSSSMDMPAGLGFDGHGHGCDGSSSFNQHEVISE 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00004 276 CDD bHLH_AtIND_like 138 195 - -
Vium4142g00004 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Vium4142g00004 276 SMART finulus 143 192 IPR011598 GO:0046983
Vium4142g00004 276 Pfam Helix-loop-helix DNA-binding domain 147 186 IPR011598 GO:0046983
Vium4142g00004 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 196 IPR036638 GO:0046983
Vium4142g00004 276 Gene3D - 140 198 IPR036638 GO:0046983
Vium4142g00004 276 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 226 IPR045843 GO:0003700|GO:0006355
Vium4142g00004 276 FunFam BHLH transcription factor 140 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00004 Vium-Chr4142 65612 67459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00004 106 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.775 3.04e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4142g00004 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00004 - - gmx:100775296 391.734