Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00003 ATGGGATTTTCAAACGAGGAATCTTTTTCTGGAGGCAGGTGTTCAAATAAGGATGACATTGTTGTGAGCAAAGATGACAGAGTTTCAGATGCGCAAAACACTGATGGAAGTAACAAAATGGAATTGTCACCTGTAAATGAAGATTTAAAAAATAAGTACAGTCAATCCCCAAAAACTGGTTACAGTAGGTCAGACAGAAGTAGTAGCCCAAGCCGGAGCAGGAGCAGGAGCCCTCGTAATTTTAGGTGGGATTCAAGAACCAGTGATAGATGTGGAATGAGGGCAGCATGTAGATATTTTCCTTATGGGAAATGCAGAAGAGGAAGTAAATGTCTCTTCCTTCACGGTGACAATCAAAAAATTGATGACAGCAGGGTAAGTTCACGCAGGCAAGATGGATCTCTCTTATATTCTAGTCCAAGTGGAAGATCTAAAGGAACTTGTATAAACTATGCAAATCGAAGGTGTAGAATGGGAGAATCATGCAAGTATATGCATCATGAAAATTCTAGCAAGTTCAATAAAACTTCTATGGATGAATCGACTGGGGAAATGGAAATTGATAGAAGGTGCAGAGGGAGTTCTTTCGAAGAAGGTGGTAGAAACCAGAGAAGTGACATTCCTTGCAAATTATATCCATTTGGGAATTGTCGATATGGTAAAGATTGTAGATTTTCTCATGATAGGCAAGCAAGTGGGAGCCCAAGTAGAGGCTTCAAGGATGACTTGTTAAGGAGCAGCGATGGAGATCAGGCTTTGGATAGGCCAGAATCAAGTGAAGTCAGTCTCCATGGCAAGCTAATGGATGATGGAGAGGATTTAGATGGTAGTGTGGCTGGTGCAGATAACAAACAAGGAATTATGGTTGACCCAGAACCTGGATTTAATACTTTGCCCGTTGGTGATGAACGGGGCCATAGCTTAGACAAGAACACAGTGCATGGTGAATCAACATTTTCAAGTGAAGTGAAGGAGGCCAAAAGTGATAGTTCCAACGTTCACACTTGTCAGTCAGTAGGAAATGAAAAAATGTCTCATAATTGGAATTATGGTGTGACATCTCCCATCCCTATTAAAGAAGAGCATGAGCAGAGTAAGCAACAAGTTACTCCAGAACAAGTAATTCATCAAAATGTAAATGTTTCGCATTCTTCAAGCTGTGAGGAAGTTGGACAAAGTCAATTAGCACCTTCCACTGTTCCTCCAAGTGTGAGAACTATTGAAAGTGTGCAGAACCAGGAAGTGTTTGCTGAGAAAAAACAGACAAGTGGGGCAAATGTCATGGATGCAAATATACCACAAGTTGGTTCAGGTGATGCTCCAATTGAAAACGTGACAAGGGAAGAGCAACTAGCTCAACTTACTAATCTTTCAGTCTATCTGTTACAAATCCTGGGAGCCATTCTGCATCTCCCACAAATTTTTGCTCCTTCTGTTTCTTTAGATGCAAAGAGCACTCCCTTCCAAAGCAAAACTGAAGAGTCAGGTAACCCTGTTTCCATAACATCCACCAAACCAGGTCCTTCTGTTGGACTCCTAAAGCCGCGAGATCCAAGACGTAAGTTTAGAGAGTCGATGATTGTTAATGAAAAAAAGGTGGTCCCCGCCATTTCTCCAAGTCAAAATATCACAGAAGATACAGCAGAAATTCCATCATTGTTATCTGATTCACAACAACACTTTGATGAGTCTAAAAAGTCTGCCTTTTCAGAAGAACAGCTTGTCAAGAGTGAACATTCAATTGAGTTGCAGAAAGGTGAAAATGTTGAGGATAGTAACGAGAAAAACAAAATGGTAGCTGAAGGAAAGCCAAATTCTTCTACATGTGAACCTGAGGACGCCAAGACAGTGAAGGATGTGAAAGGAATTGATGCATTTAAATTTGAATTGGTTGAGTTCGTTAAGGAGCTTTTAGATCCAACATGGAAATGTGGAAAAATAAAAAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTGCTGACAAAGTTACTGATACAGTGCAGCCGCCATATATTCCTCAGACAAAAGAGCAAATTGACCGTTATTTATCAATATCAAAAACAAAGATTGACAAACTTGTACAGGCATATGTGGAAAAGTTTCAGAAGGCTTAG 2115 0.4005 MGFSNEESFSGGRCSNKDDIVVSKDDRVSDAQNTDGSNKMELSPVNEDLKNKYSQSPKTGYSRSDRSSSPSRSRSRSPRNFRWDSRTSDRCGMRAACRYFPYGKCRRGSKCLFLHGDNQKIDDSRVSSRRQDGSLLYSSPSGRSKGTCINYANRRCRMGESCKYMHHENSSKFNKTSMDESTGEMEIDRRCRGSSFEEGGRNQRSDIPCKLYPFGNCRYGKDCRFSHDRQASGSPSRGFKDDLLRSSDGDQALDRPESSEVSLHGKLMDDGEDLDGSVAGADNKQGIMVDPEPGFNTLPVGDERGHSLDKNTVHGESTFSSEVKEAKSDSSNVHTCQSVGNEKMSHNWNYGVTSPIPIKEEHEQSKQQVTPEQVIHQNVNVSHSSSCEEVGQSQLAPSTVPPSVRTIESVQNQEVFAEKKQTSGANVMDANIPQVGSGDAPIENVTREEQLAQLTNLSVYLLQILGAILHLPQIFAPSVSLDAKSTPFQSKTEESGNPVSITSTKPGPSVGLLKPRDPRRKFRESMIVNEKKVVPAISPSQNITEDTAEIPSLLSDSQQHFDESKKSAFSEEQLVKSEHSIELQKGENVEDSNEKNKMVAEGKPNSSTCEPEDAKTVKDVKGIDAFKFELVEFVKELLDPTWKCGKIKKEDYKAIVKKVADKVTDTVQPPYIPQTKEQIDRYLSISKTKIDKLVQAYVEKFQKA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00003 704 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 5 703 - -
Vium4142g00003 704 MobiDBLite consensus disorder prediction 69 85 - -
Vium4142g00003 704 ProSiteProfiles Zinc finger C3H1-type profile. 142 169 IPR000571 GO:0046872
Vium4142g00003 704 MobiDBLite consensus disorder prediction 227 276 - -
Vium4142g00003 704 MobiDBLite consensus disorder prediction 561 613 - -
Vium4142g00003 704 Pfam RNA-binding, Nab2-type zinc finger 148 166 - -
Vium4142g00003 704 Pfam RNA-binding, Nab2-type zinc finger 208 227 - -
Vium4142g00003 704 Pfam RNA-binding, Nab2-type zinc finger 96 116 - -
Vium4142g00003 704 Gene3D - 198 241 - -
Vium4142g00003 704 MobiDBLite consensus disorder prediction 18 32 - -
Vium4142g00003 704 ProSiteProfiles Zinc finger C3H1-type profile. 96 118 IPR000571 GO:0046872
Vium4142g00003 704 MobiDBLite consensus disorder prediction 561 598 - -
Vium4142g00003 704 MobiDBLite consensus disorder prediction 48 68 - -
Vium4142g00003 704 SMART c3hfinal6 92 117 IPR000571 GO:0046872
Vium4142g00003 704 SMART c3hfinal6 203 229 IPR000571 GO:0046872
Vium4142g00003 704 SMART c3hfinal6 143 168 IPR000571 GO:0046872
Vium4142g00003 704 MobiDBLite consensus disorder prediction 1 85 - -
Vium4142g00003 704 MobiDBLite consensus disorder prediction 487 516 - -
Vium4142g00003 704 Gene3D - 90 174 - -
Vium4142g00003 704 MobiDBLite consensus disorder prediction 241 273 - -
Vium4142g00003 704 MobiDBLite consensus disorder prediction 487 507 - -
Vium4142g00003 704 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00003 Vium-Chr4142 44679 48206 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4142g00003 zf-CCCH_2 0.0013 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00003 - K22909 vra:106759211 607.06