Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4142g00002 ATGTTCAACGATCACCCGTTCTCCCAACATTCCACAATGGATTATCTCTTCCTCTTCTCTCTCTTCCTGCTCCTAACCCTCTCCGCCGCGCACCGAAAAACCCCACCTGTCGCCGCCGTCAAATCTGTCACGCCGGAGATCCAACAAGCCTGCGCCGCCACGCGCTTCCCGCAGCAATGCGAAACCTCTCTCTCCCAATACCCCAAACTCCCGCCCAACCCGACCTCTCTCCAGTTAATCCAGTCCGCCATCGCCATCTACTCTGAAAACCTCGCCACCGCGCAGTCCATGGTGAAGTCCCTCCTCGACGGTGCTGCCGGCAGCCGCAACCTCACCGTGGCCGCCTCCACCTGCTTGGAAGTGTTGGACAACTCGAAGCACCGCTCTTCCCTCGCCAGCGACGCTCTACCACTCGGCAAAATCAAGGACGCGCGCGCGTGGCTGGGCGCGGCGCTCGCATACCAGTACGACTGCTGGAACAGCCTCAAATATGCCAACGTGTCAGCGGCCGTCGGCAAAGCGATGGCGTTCATCGACTCCCTCGAATCTTTCTCCAGCAACGCCCTCAGCATGGCCTTCTCCCTCGAAGCCTTCGGAAACGACACAGCTTCATGGAAACCTCCAGCCACCGAGCGCAACGGCTTCTGGGGCAGCCTCGCCTCCGGCGACTCCGGCGCCGTGGGAGGTGTTCCGCCCAATTTGAAACCCGACGTTACGGTCTGTAAAGACGGAGCTGGCGGCTGTTATAAGACCATACAAGAGGCCGTTAACGCTGCGCCAGATAACGGCGACGGGAAGAAGTGGTTTGTCATACTCATAAAAGAAGGAGTTTACAAGGAGACCGTCAGGGTTCCGTTGGCGAAGAGGAATGTGGTGTTCTTGGGTGACGGCATTGGCAAAACGGTTATAACCGGTGACGCTAACGTGGGGCAACCAGCCATGACAACTTACAACTCTGCCACCGTCGCGGTTCTTGGGGATGGATTCATGGCAAAGGATCTGACAATTGAGAACACGGCCGGTCCTGACGCACACCAAGCAGTGGCATTCAGATCAGACAGTGATCTTTCTGTGATTGAGAATTGCGAATTCTTGGGCAACCAAGACACTCTCTATGCTCACTCCCTGCGCCAATTCTACAAGTCATGCCGCATTCAGGGCAACGTCGACTTCATCTTTGGAAACGCTGCTGCAGTTTTCCAAGACTGTCTCATCCTGGTTCGTCCCAGGCAAGTACGTCCAGAGAAGGGCGAGAACAATGCTATCACTGCACATGGCAGAACAGACCCAGCACAACCCACAGGCTTTGTTTTCCAGAACTGTCTCATTAATGGCACCGAGGAGTACATGGCTTTGTATCACAACAACCCTAAGGTGCACAAGAACTATTTGGGCAGGCCTTGGAAGGAGTATTCCAGAACGGTTTTCGTTAATTCAGAGTTGGAAGTGATTGTGACAACCCAGGGTTGGATGCCATGGAGTGGTGATTTTGCCCTCAAGACTCTTTACTATGGGGAATTTGGGAACAAGGGACCTGGTTCTGATCTGTCTCAGAGGGTATCATGGAGTAGTAAGATCCCTGAAGACCACGTCCTAGCCTACTCAATACAGAACTTCATTCAAGGAAATGATTGGATTCCATCATCGTCCTCGTAA 1656 0.5429 MFNDHPFSQHSTMDYLFLFSLFLLLTLSAAHRKTPPVAAVKSVTPEIQQACAATRFPQQCETSLSQYPKLPPNPTSLQLIQSAIAIYSENLATAQSMVKSLLDGAAGSRNLTVAASTCLEVLDNSKHRSSLASDALPLGKIKDARAWLGAALAYQYDCWNSLKYANVSAAVGKAMAFIDSLESFSSNALSMAFSLEAFGNDTASWKPPATERNGFWGSLASGDSGAVGGVPPNLKPDVTVCKDGAGGCYKTIQEAVNAAPDNGDGKKWFVILIKEGVYKETVRVPLAKRNVVFLGDGIGKTVITGDANVGQPAMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNAAAVFQDCLILVRPRQVRPEKGENNAITAHGRTDPAQPTGFVFQNCLINGTEEYMALYHNNPKVHKNYLGRPWKEYSRTVFVNSELEVIVTTQGWMPWSGDFALKTLYYGEFGNKGPGSDLSQRVSWSSKIPEDHVLAYSIQNFIQGNDWIPSSSS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4142g00002 551 PANTHER PECTINESTERASE 28 547 - -
Vium4142g00002 551 SUPERFAMILY Pectin lyase-like 235 548 IPR011050 -
Vium4142g00002 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 195 IPR035513 -
Vium4142g00002 551 SMART PMEI_2 42 191 IPR006501 GO:0004857
Vium4142g00002 551 Pfam Pectinesterase 237 543 IPR000070 GO:0030599|GO:0042545
Vium4142g00002 551 NCBIfam pectinesterase inhibitor domain 18 190 IPR006501 GO:0004857
Vium4142g00002 551 FunFam Probable pectinesterase/pectinesterase inhibitor 51 45 194 - -
Vium4142g00002 551 FunFam Pectinesterase 232 551 - -
Vium4142g00002 551 CDD PMEI-like_3 50 191 - -
Vium4142g00002 551 Gene3D - 232 551 IPR012334 -
Vium4142g00002 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 191 IPR035513 -
Vium4142g00002 551 Pfam Plant invertase/pectin methylesterase inhibitor 47 191 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4142g00002 Vium-Chr4142 26604 29162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4142g00002 34 545 Carbohydrate Esterase AT5G09760 63.443 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4142g00002 - - gmx:100819675 879.011