Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4141g00012 ATGAAGTCCCCTTGCCGCCGCTGCCTGATCGTACAACAAATTTGCAATGGGTGGCCTGCGATCAGCGTACGGTTAGAACTTCCTTTTTGTGAGGTCCCCACCATTCTCACCTATATGGGCAAGAGCTGGGACATGGTGTATTGTGGACAAAACAAACTGCAGGTTTTTAGTGCCGCAGGATGGAAAAAGTTTGCTGTTGAAAATTGTTTGAGGGTTGGAGATGCATGCATTTTTGAGCTGATGGAAAGCAGTGACAAGAAAGTCATCTTTGAAGTTCAAATTCTTAGAGGTGACATCCCATATGAAATTCTTAAAAATGAAATGATTATAGGTCAGAATCCGGAAATGCCAATTGTCCTTAACTAG 366 0.429 MKSPCRRCLIVQQICNGWPAISVRLELPFCEVPTILTYMGKSWDMVYCGQNKLQVFSAAGWKKFAVENCLRVGDACIFELMESSDKKVIFEVQILRGDIPYEILKNEMIIGQNPEMPIVLN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4141g00012 121 CDD B3_DNA 40 96 IPR003340 GO:0003677
Vium4141g00012 121 Pfam B3 DNA binding domain 35 90 IPR003340 GO:0003677
Vium4141g00012 121 Gene3D - 12 98 IPR015300 -
Vium4141g00012 121 ProSiteProfiles B3 DNA-binding domain profile. 40 98 IPR003340 GO:0003677
Vium4141g00012 121 SUPERFAMILY DNA-binding pseudobarrel domain 33 96 IPR015300 -
Vium4141g00012 121 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 100 IPR044837 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4141g00012 43 98 REM Transcription Factor Family AT4G33280 38.095 1.11e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium4141g00012 B3 1.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4141g00012 - - vum:124836854 254.988