Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4141g00011 ATGTTGGGTGGATTATACGGAGACCTTCCTCCACCTTCTTCGGCGGAGGAAGACAACAAACCCACTCCCAATGTGTGGTCTTCCAGCACCAAGATGGCCCCGGCCACGCTCCGCAAGCCCGCCTCGCTCTTCGCGCCTCCCCAAACCCTCCTCCGAACCCAGCCCAAGCCCAAGCCCGTTGTCGCCAACACTAAGGCCCTTCTCTCCCCCACGCCCGCCCCGCCTCCTGACGACGCCCTGCAGCCCGCTCTTGTCGGCGTCCAGTCAACCGTTCTCGAGGAGTACGACCCTGCCCGGCCCAACGACTACGAGGAGTACCGCCGCGACCGCAAGCGCAAGGCCCGTGAGGCCGAGATGCTGCGGGAGCTCGAGCGCCGCCGCCAGGAGGAGGAGGACGAAGAGAGGGAGCGCGAGAAGGAACGAGAGCGAGAAAGGGATTACAGTGAATCGAGGTTGAATGTTTCCGGTGAAGAGGCGTGGAGGAGGCGTGCGGCGATGAGTGGGGCCGTGCCGAGATCACCGTCGCCGCCTCCAACGGGGAATTCGGACGGGTTTAGCATTGGGAAGTCTGAGACAGGAGGGTTGGGAGTGGGGGCGGGTGGACAGATGACGGCGGCGCAGAGGATGATGGCGAAGATGGGATGGAAGGAGGGGCAGGGACTTGGGAAGCAGGAGCAGGGGATTACCACTCCTTTGATGGCAAAGAAAACGGATAGAAGAGCTGGGGTTATTGTGAATGCTAGTGATAACAGCAAGAAAGTGAAGAGTGTTAACTTCAATGGAGTGCCTACCAAGGTGCTGCTACTTAGGAATATGGTGGGTCCTGGCGAGGTAGACGACGAGCTGGAAGATGAAGTGGGATCAGAATGTGCCAAGTATGGAACGGTAACCCGAGTTCTGATATTTGAGATAACAGAACCAAATTTCCCCACTGATGAAGCTGTAAGAATATTTGTGCAATTCGAGAGATCCGAAGAAACAACTAAAGCGCTTATTGACCTCGATGGTCGATATTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGATGAGGAGAAGTTTGGCAAGAATGAGTTAGCTCCAATGCCTGGAGAAATTCCTGGCTTCACCTGA 1113 0.5669 MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRTQPKPKPVVANTKALLSPTPAPPPDDALQPALVGVQSTVLEEYDPARPNDYEEYRRDRKRKAREAEMLRELERRRQEEEDEEREREKERERERDYSESRLNVSGEEAWRRRAAMSGAVPRSPSPPPTGNSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSKKVKSVNFNGVPTKVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALIDLDGRYFGGRVVRASFYDEEKFGKNELAPMPGEIPGFT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4141g00011 370 FunFam Putative splicing factor 45 264 350 - -
Vium4141g00011 370 MobiDBLite consensus disorder prediction 18 35 - -
Vium4141g00011 370 CDD RRM_UHM_SPF45 263 359 IPR034653 -
Vium4141g00011 370 Gene3D - 261 359 IPR012677 -
Vium4141g00011 370 SMART rrm2_1 266 347 IPR003954 GO:0003676
Vium4141g00011 370 Coils Coil 103 145 - -
Vium4141g00011 370 MobiDBLite consensus disorder prediction 1 196 - -
Vium4141g00011 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 351 IPR000504 GO:0003723
Vium4141g00011 370 PIRSF SPF45 3 366 IPR040052 GO:0045292
Vium4141g00011 370 SUPERFAMILY RNA-binding domain, RBD 268 353 IPR035979 GO:0003676
Vium4141g00011 370 Pfam G-patch domain 205 244 IPR000467 GO:0003676
Vium4141g00011 370 PANTHER SPLICING FACTOR 45 SPF45 1 361 IPR040052 GO:0045292
Vium4141g00011 370 MobiDBLite consensus disorder prediction 97 158 - -
Vium4141g00011 370 ProSiteProfiles G-patch domain profile. 202 248 IPR000467 GO:0003676
Vium4141g00011 370 SMART G-patch_5 200 246 IPR000467 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4141g00011 208 243 C2H2 Transcription Factor Family AT5G26610 61.111 7.33e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4141g00011 K12840 - gmx:100805487 538.495