Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4141g00008 ATGAAGCTGCGGCTGCGAATCCTCCTCATTGCTCTGGTGTTGTGCGTCCCATTTTCTTCTTCTTCGAAGCCCAAGGACCCGTTCCTTGGAATCGCTCCCGAAGATGACAAGTATTATAGAGCTTCCGATGTTATAAGATGTAAAGATGGATCCGGAAAATTCACCAAGGCGCAGCTCAATGATGATTTTTGCGATTGCGCTGATGGCACCGATGAACCGGGTAAATCGGCATGTCCGGCTGGAAGATTTTTTTGTCGGAATGCAGGACATTCTCCTGTTGACTTGTTTTCATCCAGAGTGAATGATGGAATTTGCGATTGCTGTGATGGAACTGACGAATATGATGGTAAAGTAAAGTGTCCAAATACCTGCTGGGAGGCTGGGAAAGTGGCTCGAAATAGACTGGAAAAAAAGATTGCAACTTATGAAGAGGGTGTCAAATTGCGAAAGCAAGAAATTGAACAAGCTAAAGTGGCTATCGAGAAGGATGAGGCAGAACTTTCACAATTAAAAAAGGAAGAAAGTATACTTAAAGTGGTTGTAAAACAGTTAAAGGATCATAAAGAACAAATAGAGAAGGCAGAGGAGAAAGAACGTTTACAGAAAGAAAAGGAAGAGATGCAGAAAAAGGAGTCTGAGAAGAAGGCTAATGAAACAATAGATAAAACTGATGAAGATATGGAGAATAGAAATGAAGCTGGAAAGCATTCGGAGTTAGAAGATAATGATGTAGAAAATAATCATGATAAAATCGAAAATCTAGAGGGTTCTCATGCAGATCAGGATGAAGCAGGGAAGAAATTAGCAGATGCACTTGATAATGATGATCGAGACAGAGATGCTCCTGGAAGTGAAGGATCTTCGCATAATATAGTAGAAGAGAATGCAAAAAAATCCAATGAAGAACCTATTGTTAAATCTGAGGTTAATGATAAGGCTGGAAACGAAGTGTCCTCTGATGAAAACGTCAGTAAGGGGAATGACGTAACTGAAAACACTGAGGGATTATCGAGGGAAGAGTTGGGCCGGCTTGTTGCTTCACGTTGGACAGGAGAAAATACTGATGTCCAAAGTGCTGGAACTGATACTAAATTAGACAAAGAAGATCTTCCAAAGGAGACAAAAAAGGACGAATATGAAGGCTATAATTCTGAAACTGATGATGAGAGCAACAGATATGATGATGATGTCCACAAATATGATGATGAAGATGACGTTGACGAGGAATATCAAGAGGACGAGCATGATGATGACCTTAGTTCCTCATCTAAATCCGATTCTGATAATGAACCAGACTTGTCAGATAATCCTTCTTGGTTAGAGAAAATACAGAAAACAGTACGAAATATTTTTCAGGCTGTCAACTTATTCCAGGCTCCAGTGAATCAGACAGATGCTGCTCGTGTACGCAAGGAATATGATGAATCAAGTGCCAAGTTGTCTAAAATACAGTCTAGAATATCAAGTCTGACGCAAAAGCTAAAACATGATTTTGGCCCAGCAAAGGAGTTTTATACATTCTATGATCAGTGCTTTGAGGGCAAGGAGAACAAGTACACTTACAAAGTCTGCCCCTATAAACAGGCTTCTCAAGAGGAGGGTTATTCCACCACCCGTTTGGGGCGCTGGGACAAATTTGAGGATTCATACAAAGTAATGGTGTTCTCTAATGGCGATAAATGCTGGAATGGTCCTGATAGGAGTTTGAAGGTCAAGCTAAGATGTGGGTTGAAAAATGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAATATGTAGCTTTATTATCTACTCCAGCCCTTTGTCAAGAGGAAAAGCTAAAGGAGTTACAACACAAGCTAGAGTTATTGAATACGGAACAACCAGCAAACCATGATGAGTTGTGA 1887 0.4049 MKLRLRILLIALVLCVPFSSSSKPKDPFLGIAPEDDKYYRASDVIRCKDGSGKFTKAQLNDDFCDCADGTDEPGKSACPAGRFFCRNAGHSPVDLFSSRVNDGICDCCDGTDEYDGKVKCPNTCWEAGKVARNRLEKKIATYEEGVKLRKQEIEQAKVAIEKDEAELSQLKKEESILKVVVKQLKDHKEQIEKAEEKERLQKEKEEMQKKESEKKANETIDKTDEDMENRNEAGKHSELEDNDVENNHDKIENLEGSHADQDEAGKKLADALDNDDRDRDAPGSEGSSHNIVEENAKKSNEEPIVKSEVNDKAGNEVSSDENVSKGNDVTENTEGLSREELGRLVASRWTGENTDVQSAGTDTKLDKEDLPKETKKDEYEGYNSETDDESNRYDDDVHKYDDEDDVDEEYQEDEHDDDLSSSSKSDSDNEPDLSDNPSWLEKIQKTVRNIFQAVNLFQAPVNQTDAARVRKEYDESSAKLSKIQSRISSLTQKLKHDFGPAKEFYTFYDQCFEGKENKYTYKVCPYKQASQEEGYSTTRLGRWDKFEDSYKVMVFSNGDKCWNGPDRSLKVKLRCGLKNEITDVDEPSRCEYVALLSTPALCQEEKLKELQHKLELLNTEQPANHDEL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4141g00008 628 MobiDBLite consensus disorder prediction 291 315 - -
Vium4141g00008 628 Gene3D - 504 602 IPR009011 -
Vium4141g00008 628 Coils Coil 600 620 - -
Vium4141g00008 628 Coils Coil 466 486 - -
Vium4141g00008 628 MobiDBLite consensus disorder prediction 195 284 - -
Vium4141g00008 628 MobiDBLite consensus disorder prediction 400 416 - -
Vium4141g00008 628 SUPERFAMILY Mannose 6-phosphate receptor domain 509 602 IPR009011 -
Vium4141g00008 628 Coils Coil 146 222 - -
Vium4141g00008 628 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 8 628 IPR039794 -
Vium4141g00008 628 MobiDBLite consensus disorder prediction 417 431 - -
Vium4141g00008 628 MobiDBLite consensus disorder prediction 195 437 - -
Vium4141g00008 628 Pfam Glucosidase II beta subunit-like protein 470 627 IPR036607 -
Vium4141g00008 628 ProSiteProfiles MRH domain profile. 509 604 IPR044865 -
Vium4141g00008 628 MobiDBLite consensus disorder prediction 361 399 - -
Vium4141g00008 628 MobiDBLite consensus disorder prediction 316 331 - -
Vium4141g00008 628 Pfam Glucosidase II beta subunit-like 23 172 IPR028146 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4141g00008 Vium-Chr4141 178963 192303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4141g00008 19 628 Calmodulin-binding Proteins AT5G56360 56.051 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4141g00008 K08288 - gmx:100807083 970.689