Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4141g00007 ATGGAAGAAGTTTGTCTGAATAGTGAGCCATTTTTTGATGAAAGCGATGATGTTGATGTGGAAGGCTCTTCTGTAGTAGAACACGGGCTTGAATCTTTAAATTCAAAACCGAAAAACCCTCCAGTTCCAACAGTGGGTCTAGAGTTTGATTCCTTTGAGGAAGTTTACAACTTCTACAATATCCATGCAAAGGAACAAGGCTTTGGAATCAGAGTTAGCAATTCATGGTTTAGATCAAAGAAAAAAGAGCGCTATAGGGCAAAACTTAGCTGCAGTAGTGCTGGTTTTAAGAAAAAAAGTGAAGCCAATAATCCAAGACCAGAAACAAGAACTGGCTGTCCTGCAATGATAGTGATTAGAATGGTTGAGTCCAGGAGATGGAGAATAGTGGAAGTTGAGCTTCAACACAACCATCAAGTGAGTCCACAGAGCAAACAATTTTACAAGTCACACAAGAAGATGGTCCTTGAAGCTAGCAAATCACAACCACCTCCGGAGCCAGTAACAGAAGTACACACCATCAAGTTGTATCGAACAACTGTCATGGATGTTGATTACAATGGTTACTCAAATTCTGAAGAAAGCCATGACACCAATTTTGATAAATTTAAATATTTGGAACTTAGAGAAGGGGATGCCAGTGCTATATATAATTATTTTTGTCGAATGAAGTTGACTGATCCAAATTTTTTTTACTTGTTTGATATTGATAATGATGGGCACCTAAAAAATGTTTTCTGGGCTGATTCCAGGTCAAGGATTGCTTATAATTACTTTAATGATACAGTTACAATAGACACAACTTGTTTGGCAAACAAATATGAGATCCCTTTGATATCGTTTGTTGGTGTAAACCATCATGGACATTCTGTATTATTGGGCTGTGGCTTCCTTGGACACGAATCAGTGGATTATTTCGGATGGATATTCAAGGCATGGCTTAAGTGTATGCTTGGTCGTCCTCCACATGTTGTTATTACTGACCAGTGCAAGCCATTGCAAATTGCAGTTGCTCAGGTTTTCCCTCATGCTCGTCATTGTTATTCTTTGCAGTATATCATAGAAAGAGTTCCAGAAAAGTTGGGAGGGTTGCAAGGATACGAAGCAATCAGAAGACAGATGTATAATGCTATATACGAGTCATTAAAGATAGTTGAGTTTGAATCTTCTTGGGCTGATATGATTAAATGTCATGGACTGGGAGATAACAAGTGGCTTCAGACATTGTATAAGGATCGGCATCTATGGGTCCCTGTGTACCTAAAAGACGTTTCTTTGATAGGACTGATCTCAACTAAAGAAAATGAGGGCCTGACTGCATTTTTTGATCGTTATGTGCATAAACACACATCCTTTAAGGAATTCCTTGACAAGTATGACTTAGCTCTACACAGGAAGCACATGAAAGAAGCCATGGCAGATTTGGAGACTAGAAAAGCAAGCTTTGAATTCAAAACGAGATGTAATTATGAGGCCCAACTCTCAAAGGTGTACACAGAAGAAATCTTTAAAAAGTTTCAAGTAGAGGTTGAGGGCATGTATTCTTGCTTCAACACAAGACAGGTTAATGTCAACGGATCTATAATAACATACATTGTGAAAGAAAGAGTTGAAGTTGAGGGGAGCGAGAAGGGAGTTAAAAGTTTTGAAGTTTTATATGAGACTACAAAATTGGATATTCGTTGCATTTGCAGTTTGCTCAATTACAAAGGATATCTGTGCAGGCATGCATTGAATGTTCTCAATTATAATGGCGTTGAGGAAATCCCATCTCGGTACATCCTACGCCGTTGGACAAGGGATTTCAAGCATTCGTGTAATCAATTCCATGCTCCTAGTAATACTGATATCTACAACCCTGTGCACTTGTATACCCATCTGTTTAACAGTGCTCTTCCAGTGTTAGAAGTAGGGGCACAGTCACAGGAGCATTATATGGTTGCTCTAAAGGAATTGGAGGAGTTGCTAGATAAGTTTGATATAGAGGATAGTAACTCAATGTAA 2004 0.3867 MEEVCLNSEPFFDESDDVDVEGSSVVEHGLESLNSKPKNPPVPTVGLEFDSFEEVYNFYNIHAKEQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVESRRWRIVEVELQHNHQVSPQSKQFYKSHKKMVLEASKSQPPPEPVTEVHTIKLYRTTVMDVDYNGYSNSEESHDTNFDKFKYLELREGDASAIYNYFCRMKLTDPNFFYLFDIDNDGHLKNVFWADSRSRIAYNYFNDTVTIDTTCLANKYEIPLISFVGVNHHGHSVLLGCGFLGHESVDYFGWIFKAWLKCMLGRPPHVVITDQCKPLQIAVAQVFPHARHCYSLQYIIERVPEKLGGLQGYEAIRRQMYNAIYESLKIVEFESSWADMIKCHGLGDNKWLQTLYKDRHLWVPVYLKDVSLIGLISTKENEGLTAFFDRYVHKHTSFKEFLDKYDLALHRKHMKEAMADLETRKASFEFKTRCNYEAQLSKVYTEEIFKKFQVEVEGMYSCFNTRQVNVNGSIITYIVKERVEVEGSEKGVKSFEVLYETTKLDIRCICSLLNYKGYLCRHALNVLNYNGVEEIPSRYILRRWTRDFKHSCNQFHAPSNTDIYNPVHLYTHLFNSALPVLEVGAQSQEHYMVALKELEELLDKFDIEDSNSM 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4141g00007 667 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Vium4141g00007 667 SMART 26again6 560 587 IPR006564 GO:0008270
Vium4141g00007 667 Pfam FAR1 DNA-binding domain 57 141 IPR004330 -
Vium4141g00007 667 Pfam MULE transposase domain 263 351 IPR018289 -
Vium4141g00007 667 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 658 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4141g00007 Vium-Chr4141 158105 163112 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium4141g00007 MULE 1.4e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4141g00007 K17604 - gmx:100811666 1214.52