Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium413g00003 ATGATGTCAGATCAACAGCATTCCCAGCAACTCGAACTTCAGAGTTTTCAGCATAGTCAACCATCAATGCAACAGTTCTCTGCTCCTCTGAACGCTCAGCAGCAACAACAGCATTTTCAGTCAATTCGTGGTGGAATGGGTGGTGTTGGATCGGTTAAGTTGGAGCCACAGGTAAACAACGACCAGTTTGGGCAGCAGCAGCAGCATTTGCCTTCAAGGAATCTTGCTCAGGTGAAGTTGGAACCTCAACAGCTTCAAACAATGAGAAACATGGCAGCAGTAAAAATGGAGCCTCAACATACTGATCAGCAGTTTTTGCATCAGCAGCAACAACAGCAGCAGCAACAGCAGCAACAACAACTTCTCCACATGTCAAGGCAATCGTCTCAGGCTGCTGCTGCTCACATGAATCATCTTTTACAGCAGCAGAGACTTTTGCAATATCAACAACATCAGCAGCAGCAACAGCAACAACAACAACTCTTGAAGGCAATGCCTCAACAACGACCCCATCTACCACAGCAGTTTCAACAGCAGAATATGCGGTCTCCTGTGAAGCCACCTTATGAACCTGGAATGTGTGCTAGGCGGCTGACCCATTACATGTATCAGCAACAGCATAGACCTGAAGATAATAACATTGAATTCTGGAGGAAATTTGTTGCTGAGTATTTTGCTCCGAATGCCAAAAAGAAGTGGTGTGTTTCCATGTATGGAAGTGGCAGACAAACTACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGTAATCGCAAACCTGGCCGTGGGTTTGAAGCGACTGCAGAGGTTCTGCCTAGGCTTTTCAAAATAAAGTATGAAAGTGGTACTCTGGAAGAGCTCCTTTATGTTGACATGCCTCGAGAATACCATAATTCCTCTGGACAGATTGTCCTAGATTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGTGATGGTCAGCTTCGAATAGTTTTTTCTCCAGACCTGAAGATATGCTCTTGGGAATTTTGTGCTCGGCGACATGAAGAGCTCATTCCTAGAAGACTGTTAATACCTCAGATTAGTCAGCTTGGAGCAGTTGCTCAAAAATACCAGGCAATTACTCAAAATGCGACACCCAATTTATCGGTTCCAGAGTTACAAAGTAATTGCAATATGTTTGTTGCATCAGCCCGTCAGTTGGCAAAAGCTTTGGAAGTTCCATTGGTCAATGATCTAGGATATACAAAGAGATATGTGCGGTGCCTTCAGATATCAGAAGTGGTAAATAGTATGAAAGACCTGATAGATTATAGCAGAGAAACACGAACTGGACCCATGGACAGCTTAGCAAAATTTCCTCGTAGAACAAGCGGTTCATCTGGACTTCATAGTCAGGCACAACAGTCTGAAGATCATTTACAGCAGCAGTCACAGCCTCAGCAGCCACTCCCGCATATGGTTCCCCATACTTCAAGTGGTGATAAAAATTCTGTGCAAACTGCTGCGATGCAGATTACTTCCACCAATGGTGTGACAAATGTAAATAATTCTGTCAATGCAGCATCTGCATCAACCACCACAAGCACCATTGTTGGACTTCTCCACCAGAATTCTGTGAATTCTAGGCAAAATTCAATGAACAATGCAAGCAGTCCTTATGGGGGTAGTTCGGTTCAAATTCCATCCCCAGGTTCGTCTGGTAATGTTCCACAAGCGCAGCCAAATGCATCCCCTTTTCAATCACCCACACCATCCTCATCTAACAATCCACAAACATCTCATCCGGCATTAACTTCTGGAAACCACATGGGTGCGGCAAATTCACCTGCCAATATTCCCTTGCAACAACAACAGACTTCTCTCCCTGCTGAAGCTGACACGACGGATGCCCAGAGCTCAGTCCAGAAAATCATTCATGAAATGATGATGTCCTCCCAGATGAACGGCCCAGGTGGAATGGCTGGTTCTCTTGGAAACGACATGAAAAATGTAAACGGGATTCTACAAGGGAGTAACAATTCAGGGCTCAACAATAACGGTGGCCTTGTGGGTAATGGGGCTGTGAACAGTAATTCAGGTGTTGGGGTTGGTGGTTATGGCACAATGTGTCTTGGTCCATCGGGTATGAGCAATGGAATGAGACCTGTAATGGGACATAATTCCATAATGAATGGAAGGGGAGGACTGGCATCTCTTGCTCGCGAGCAAGTTATGAATCAGCAAGATTTGTCAACCCAACTACTTAGTGGGCTAGGAGCAGTAAATGGCTTTAATAATCTTCAATTTGATTGGAAACCATCTCCATGA 2313 0.4462 MMSDQQHSQQLELQSFQHSQPSMQQFSAPLNAQQQQQHFQSIRGGMGGVGSVKLEPQVNNDQFGQQQQHLPSRNLAQVKLEPQQLQTMRNMAAVKMEPQHTDQQFLHQQQQQQQQQQQQQLLHMSRQSSQAAAAHMNHLLQQQRLLQYQQHQQQQQQQQQLLKAMPQQRPHLPQQFQQQNMRSPVKPPYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQISQLGAVAQKYQAITQNATPNLSVPELQSNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPMDSLAKFPRRTSGSSGLHSQAQQSEDHLQQQSQPQQPLPHMVPHTSSGDKNSVQTAAMQITSTNGVTNVNNSVNAASASTTTSTIVGLLHQNSVNSRQNSMNNASSPYGGSSVQIPSPGSSGNVPQAQPNASPFQSPTPSSSNNPQTSHPALTSGNHMGAANSPANIPLQQQQTSLPAEADTTDAQSSVQKIIHEMMMSSQMNGPGGMAGSLGNDMKNVNGILQGSNNSGLNNNGGLVGNGAVNSNSGVGVGGYGTMCLGPSGMSNGMRPVMGHNSIMNGRGGLASLAREQVMNQQDLSTQLLSGLGAVNGFNNLQFDWKPSP 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium413g00003 770 MobiDBLite consensus disorder prediction 101 133 - -
Vium413g00003 770 Pfam LIM-domain binding protein 197 451 IPR029005 -
Vium413g00003 770 MobiDBLite consensus disorder prediction 157 184 - -
Vium413g00003 770 MobiDBLite consensus disorder prediction 96 133 - -
Vium413g00003 770 MobiDBLite consensus disorder prediction 543 611 - -
Vium413g00003 770 PANTHER LIM DOMAIN-BINDING PROTEIN 5 759 IPR029005 -
Vium413g00003 770 MobiDBLite consensus disorder prediction 455 499 - -
Vium413g00003 770 MobiDBLite consensus disorder prediction 157 189 - -
Vium413g00003 770 MobiDBLite consensus disorder prediction 445 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium413g00003 Vium-Chr413 27770 39275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium413g00003 1 670 C2H2 Transcription Factor Family AT1G43850 61.615 0.0 636