Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4138g00038 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTTGACCCAACTGAATTTGAGGCATGCATCCACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAACAAATGAGCCTGTTGTTGTGTACTTGAAGGTCGGTGAGCAGAAGTTTGTCCTGGGGACCCTGTCCAGGGAGAAAATCCCTCAAATATCCCTAGAATTGGTTCTGGAGAAGGAGTTTGAACTATCCCACAGTTCAAAGAGTGCCAGCGTACATTTCTGTGGATACAAGGCATATTACTCTGGCGATGATAGCGAAGACGATGAGTTTACTGATAGTGATGAGGATATTCCATTGCTTAACGCAGAGAATGGAAAACCTGAAAAGAAAGTTGAAGAATTGAAGGCACTTGCATCTAAAAAGCCTGATGCTAAGACTGGTGCTGTAGCAAAAAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAATGAGGATTCTGATGATGATTCTGATGAAGATGATGCTTTGGGAATTTCTGATGAAGAGATGGAGGATGCTGACAGTGATGACAGCGATGAGGAGGATGACAGTGATGAAGATGACGATGAAGAGACCCCTCCTAAAAAAGCCGATTTGGGAAAGAAGAGACCAAACGAATCTGCATCAAAAACTCCTGTCTCCTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGAAGGATGGCAAGAAAAACATAAAAGCAGAAACTCCTCAATCCGTGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCCAAGGACAAGAGTCCCAAGTCCGGTGGACTTATTTGCAAGAGTTGCAGCAAGACTTTCAATACCGAAAGTGGTCTGCAACAACATAGCAAGGCCAAGCACGGCGGTCAGTGA 894 0.4463 MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEAKKDKTNEPVVVYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYSGDDSEDDEFTDSDEDIPLLNAENGKPEKKVEELKALASKKPDAKTGAVAKKVKVVEPEKDNEDSDDDSDEDDALGISDEEMEDADSDDSDEEDDSDEDDDEETPPKKADLGKKRPNESASKTPVSSKKAKNATPEKKDGKKNIKAETPQSVKKGGKTPSSEAKDKSPKSGGLICKSCSKTFNTESGLQQHSKAKHGGQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4138g00038 297 Gene3D Nucleoplasmin core domain 1 100 - -
Vium4138g00038 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Vium4138g00038 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Vium4138g00038 297 MobiDBLite consensus disorder prediction 159 202 - -
Vium4138g00038 297 FunFam Histone deacetylase HDT1 1 100 - -
Vium4138g00038 297 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Vium4138g00038 297 MobiDBLite consensus disorder prediction 272 291 - -
Vium4138g00038 297 MobiDBLite consensus disorder prediction 229 246 - -
Vium4138g00038 297 MobiDBLite consensus disorder prediction 117 158 - -
Vium4138g00038 297 MobiDBLite consensus disorder prediction 102 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4138g00038 Vium-Chr4138 176372 179455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4138g00038 1 105 C2H2 Transcription Factor Family AT5G03740 50.476 9.96e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4138g00038 NPL 1.5e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4138g00038 - - gmx:100792094 383.259