Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4138g00020 ATGGCAGGGAGAGATAATTCCAAAAACAAAATCCCAGCATTGTCTTCAGATGTAAAAATGAAGAAGAGGGGTAGGCCTCCAGGGTCGAAGTCAAATCGAGGTCGAGGACGTTCTCCTTCTCCTAGCCCTTCCGGATTTCGAGGATGTTCTCCTTCTCCTGGCCCTTCCGGATTTCGAGGATGTTCTCCTTCTCCTAGCCCTTCCGGAGTTCCACCAAATACAGTTTCTAACGTTGAGACTGGAACAGACTTAGTCGCTTACCCGATCACTGTGAATATTGGGGAGGACTTGGTAGACAAGGTATCAAGAATTGCTAAAAGATCCTCTCAAACCGTTTGCATACTTTCTGCTGTGGGTTCCATATCGAGCGTTGTCTTTCGCAAGCCCGGTCTTCCAAGTACTGATACTGTGACGTGGGAGGGTTGCTTTGATATTTTGTCACTATCTGGAAACTATTCCTTTGTCCCTGGTCAGGAGAATGGGCATGGAGGACATAACTACTGTAACCTTACAATATCTGATTGTCGTGGAACAGTTTTTGGAGGTTCTGTTGTGGGACCAATGATTGTGGCTTCCCCTGTTTATCTTACGCTTGGCACTTTCAAGCTAGGGAGTGCGGGAAAAACGACAGTACCCGCATTTGCTACTGCTCCAGTAACATCTGGACCTCTTCTCATTCCTAAAACAGAGTATCAAGAATTAGAGAGTCTCACTACTCCTAAAACAGCTGATAAAACTTCAGAGTGTGACATTACTCCTAAAACAGCTGATAAAACTTCAGAGAGTGTCACTACTCCTAAAACAACTGATAAACCAACAGAAAATGTTACTTCTACCTCGAGAGACGGCGAAGATCCAAATGGAGAAGGCGAAAAACAGAGTGTCACTCCTAAAATAACTGATAAACCACAGGAGGAACTCAGTTCTGAAACAGTTGATAAACCACCTGAGAATGTCACTCCTTCAACATCTGATAAACCACCTGAGGATGTCACTCCTGCAATATCCGATAAACCACCTGAGGATGTCACTCCTGCAACATCTGATAAACCACCTCAGGATGTCACTCCTGCAACATCTGATATACCGTCCTGA 1095 0.4484 MAGRDNSKNKIPALSSDVKMKKRGRPPGSKSNRGRGRSPSPSPSGFRGCSPSPGPSGFRGCSPSPSPSGVPPNTVSNVETGTDLVAYPITVNIGEDLVDKVSRIAKRSSQTVCILSAVGSISSVVFRKPGLPSTDTVTWEGCFDILSLSGNYSFVPGQENGHGGHNYCNLTISDCRGTVFGGSVVGPMIVASPVYLTLGTFKLGSAGKTTVPAFATAPVTSGPLLIPKTEYQELESLTTPKTADKTSECDITPKTADKTSESVTTPKTTDKPTENVTSTSRDGEDPNGEGEKQSVTPKITDKPQEELSSETVDKPPENVTPSTSDKPPEDVTPAISDKPPEDVTPATSDKPPQDVTPATSDIPS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4138g00020 364 MobiDBLite consensus disorder prediction 33 49 - -
Vium4138g00020 364 ProSiteProfiles PPC domain profile profile. 81 222 IPR005175 -
Vium4138g00020 364 MobiDBLite consensus disorder prediction 349 364 - -
Vium4138g00020 364 MobiDBLite consensus disorder prediction 237 364 - -
Vium4138g00020 364 MobiDBLite consensus disorder prediction 284 312 - -
Vium4138g00020 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 201 IPR005175 -
Vium4138g00020 364 CDD DUF296 87 201 IPR005175 -
Vium4138g00020 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 286 IPR039605 GO:0003680
Vium4138g00020 364 MobiDBLite consensus disorder prediction 313 329 - -
Vium4138g00020 364 MobiDBLite consensus disorder prediction 1 77 - -
Vium4138g00020 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 201 - -
Vium4138g00020 364 Gene3D - 86 217 - -
Vium4138g00020 364 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4138g00020 Vium-Chr4138 149050 151855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4138g00020 58 201 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 37.241 1.13e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4138g00020 - - vum:124836835 621.313