Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4138g00019 ATGGGAAGTAAGGTCAGCGACCACCACCTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCTCCGACATGGAAATCATCAGAGCCCTCCACATGGCCAAAAACGACGTCAATGCGGCCATCAACATCATCTTGGACACTCACACCGCCCCAAGATTCAATCCCACCCGCCTCAATAATCAACTTTCAGTCTCTCCTCCAAAACCCTCCCCTTCCACTCCTATCGTCACCAAGCCTAGCTTCAGTGAACAACGCATTGATAATAACAGTGATGATTGGTGGTTGGTGAATTGCGGTGAAATGACGGGTTTGTCCACGTGTAAAGGGAGGAGTATAAATTTCGGTGAGACTGTGATTTTCAAGTTTCCGACAAAGAAATTATCCTCCCCCTCTACAGGAAAGGGGTTTGGAAGGGCTGCGGCGTGTTCGGAGATAGTTCGGTTTTCTACTGAACAAGCTGGGGAGATTGGTAGAATACCAAAGGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGAGATCATAAGGTTAGGATTGAGGGGAACTGTAAATTTGCTCCTCAAGTTTTGGGCATCATGGACTCTATTATTTTGTCAGTAAGTGTATTTATCAATAGTTCAATGTTTGCAAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACGGATGAATCCGTGTTTCATCCGCTGCCAACACTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAAGAGGCAGAGTTAACTCCAGGTGATTTCTATTCCAACAAGCGTCCTCTCAGTGAAAAGGTAACATTACCACGTGCCAAGTTTGAGCATCCTTCTCAAAATGGCAATGAAAACGACAATGAGGAATCTATTTCTGAAATTGAGGTTGAGAATATTGTTGGTGTTGGATCAAGTGAAGAGTTAGAGGAAATGGACCCCCCTGCTAATCTTCAGTGCAATCTACGACCTTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGAAAATGCATGGATGAGACTGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTTGCTGACAAGAGGGAGCTTATCATTTACTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTAGTTGCCCATTCAGGAAAGGGTGAATCAGTAGGCAATCAACCCATAGCCAAGTCCTTTACTGAAGTTGGTGAAGTTAGTGATAATGTGCACACTTTTTCAAACATACCCAAGAAAGCAACCAAATTTTCGGGTTTTGATAAGCCAACAAAGCAAATGAACTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCTGAGATTGAAACTCACGTGCACCATGGATCTCTGTCTCTATATGTTCACTACGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCGCTCAGAATGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGATGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAGAGCCAAGTTTCTGTTGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACCCCAATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCATGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAAGTTAGTTCAATCAATTTTGAAGCCAATTATGTTGAGGAGAACTAAACACAGTACAGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGGTAATTTACTGTGAACAGACAGAAGCTGAAAAGGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAGTTACTTCTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGATTTCGCGGATCTAAACAAACTAGCTAAACGCTTCCTTAGAGGAACATATAATGCTTCGGATGGTGAAGTAAAAGAGGCACCTTCACGGGCTTATGTTCAAGAAGTCGTGGAGGAGCTACGTAAAGGGGAGCAAGGAGAATGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACCCCTTGCGCTCACCGCTTATGCAGGGAATGCCTCTTGGCAAGTTTGCGAAATGCTACTTCTGGCCCATGTCCTGTTTGTAGGAAAGCAGTCAACAGGCAGGATCTAATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTGCTCTTTTGAATGAACTTGAAAATCTTCGCTCATCAGGCACCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTGGACCTCTTGCAGATCCCCTTCGTTCGGAATAACATTTCATTTGTTCGTCTTGATGGAACTCTGAATCTGCAGCAGCGGGAGAAAGTAATCAAGCAATTTTCAGAGGACAGCACGACTCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAAACGGTTTATTGTGAAGGGGACCGTCGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAGGTTCGAAGTGCGCGCATTGAGGAGTTAAAGATGCTTTTTACTTAG 3000 0.4407 MGSKVSDHHLSTVRSIVGSEFSDMEIIRALHMAKNDVNAAINIILDTHTAPRFNPTRLNNQLSVSPPKPSPSTPIVTKPSFSEQRIDNNSDDWWLVNCGEMTGLSTCKGRSINFGETVIFKFPTKKLSSPSTGKGFGRAAACSEIVRFSTEQAGEIGRIPKEWARCLLPLVRDHKVRIEGNCKFAPQVLGIMDSIILSVSVFINSSMFAKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKEAELTPGDFYSNKRPLSEKVTLPRAKFEHPSQNGNENDNEESISEIEVENIVGVGSSEELEEMDPPANLQCNLRPYQKQALYWMIQMEKGKCMDETATTLHPCWEAYHLADKRELIIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGESVGNQPIAKSFTEVGEVSDNVHTFSNIPKKATKFSGFDKPTKQMNSLTSGGNLIICPMTLLGQWKAEIETHVHHGSLSLYVHYGQSRPKDAKSLAQNDVVITTYGILASEFSSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVIYCEQTEAEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQDFADLNKLAKRFLRGTYNASDGEVKEAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASLRNATSGPCPVCRKAVNRQDLITAPTENRFQVDIEKNWVESCKVTALLNELENLRSSGTKSIVFSQWTAFLDLLQIPFVRNNISFVRLDGTLNLQQREKVIKQFSEDSTTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4138g00019 999 Pfam Helicase conserved C-terminal domain 834 946 IPR001650 -
Vium4138g00019 999 Gene3D - 440 631 IPR038718 -
Vium4138g00019 999 Gene3D - 373 421 IPR038718 -
Vium4138g00019 999 Gene3D - 646 763 IPR027417 -
Vium4138g00019 999 SUPERFAMILY RING/U-box 752 810 - -
Vium4138g00019 999 CDD DEXDc_SHPRH-like 317 630 - -
Vium4138g00019 999 MobiDBLite consensus disorder prediction 56 76 - -
Vium4138g00019 999 Pfam HIRAN domain 100 199 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vium4138g00019 999 MobiDBLite consensus disorder prediction 266 286 - -
Vium4138g00019 999 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 834 999 IPR001650 -
Vium4138g00019 999 Pfam Zinc finger, C3HC4 type (RING finger) 761 808 - -
Vium4138g00019 999 SMART ultradead3 313 614 IPR014001 -
Vium4138g00019 999 Pfam SNF2-related domain 320 708 IPR000330 GO:0005524|GO:0140658
Vium4138g00019 999 SMART ring_2 764 803 IPR001841 -
Vium4138g00019 999 FunFam DNA repair protein RAD5B 372 631 - -
Vium4138g00019 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 630 IPR027417 -
Vium4138g00019 999 SMART HIRAN_2 96 203 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vium4138g00019 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 993 IPR027417 -
Vium4138g00019 999 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 592 IPR014001 -
Vium4138g00019 999 SMART helicmild6 863 946 IPR001650 -
Vium4138g00019 999 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 999 - -
Vium4138g00019 999 CDD SF2_C_SNF 830 957 - -
Vium4138g00019 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 764 812 IPR013083 -
Vium4138g00019 999 Gene3D - 813 997 IPR027417 -
Vium4138g00019 999 ProSiteProfiles Zinc finger RING-type profile. 764 804 IPR001841 -
Vium4138g00019 999 ProSitePatterns Zinc finger RING-type signature. 779 788 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4138g00019 Vium-Chr4138 137022 148055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4138g00019 1 999 RAD5 or RAD16-like Gene Family AT5G22750 69.342 0.0 1458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium4138g00019 SNF2_N 1.6e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4138g00019 K15505 - gmx:100794558 1764.97