Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4138g00018 ATGGAGCCTCCCGTTGTGAGATCTAGAGGTCGCCCGCGTAAACGGAGAAGAGAAGAGGACGGAACTGTCGCCGGCGATCCGAAAACGTTTCCTGAGGCGAAGAAGGCGCCTCCGGTTGCACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCGGGAACACGGTTCTTCTCGGCAAAGTCGTCCGCTACGAGAGCGGGTTGTACAGAGTCGTGTACGAGAGTGGCGGATTCGAGGACTTAGATAGCATCGCGATTCGTAGGATACTTCTCCTTGATAGCTATTTCGACGATGATTTAATTCGGAGGAAAGGCGAATTGGAGGAGTCGGTGTTGCCGAAGATTGCGGAGGTACGGGAGAGAGGTTCGAGCGAATTGCACGGCGATTTACTGGTTGAGAGCGAAGAAGAACGAGATGAAACGGACGACGAGTCGTGCAGCGAGGCTAGGGATTTGAGTTCCGATTCCGAAACGCCGATACCGTCTGCACCCACGCTGCCGCCTTCTTCTGGAACAATTGGCGTTCCGGAATCTTGCGTTCTGAATCTGCTTTCAGTGTACGGATTCCTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTAGACGAGTTTGTCGGTGCTTTGAACTGTAAAGTTTCTAACACGTTGCTTGATGCAATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCACCAGATGGTTCGCGGCGTGCAACAAAATGCCTTAGGTGCATTGATTGGAGTCTCCTTGATGCTTTGACTTGGCCTGTTTTTACGTTTCAGTATTTAGCAATTTATGGTTACACAAAGGGACCAGAGTGGAAAGGATTTTATAATGAAATTTTTCATGGCGAGTACTATTTATTGTCTGCAAGTAGGAAACTGATGATTTTGCAAATTCTCTGTGATGATGTTCTGGCATCTGAGGAGTTTAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAGCCTTCCTACTGAAATTGGGCCCAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACCAAGAAGTATGTTTCAGAATTGAATGCCGAGGATGTCGATGGCAATGGAGATGAATGCCGCTTGTGTGGCATGGATGGAACTTTACTTTGTTGTGATGGTTGTCCTGCAGTTTATCATTCAAGGTGTATTGGTGTGATGAAAATGCATATACCGGATGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTTCTATTGCACGGGGAACATCACTGAAAGGGGCTGAAGTATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGCACATGCGACCACTTACTGGTACTCGATGTCAACAGTGATGAATTTTGTCTTAAGTACTACAATCAGAATGACATTCCTGAAGTTCTCCAAGTCCTTACTGCATCTGAGCAACTTAGACCTATATACAATGGCATTTGCATGGCAATGTTAGAGTATTGGAAAATTCCAGAAAACTTCTTATCCATTTGTGTCACAAGTGTACCGAAAGTAAACTTAACAAATTCAAATACAGACGTGAAACTTTCTCCCATGATTGAAGAAAAGAATCAAGCTCTCGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTAGCTGAATTTTCTACAATCCAAAGTGCTGCAGTTACTCTTGGAACTACACAGAAAGGTGCAACATGTGGGAGGCGTAAGAAACAGTTATCTATCAACAAAGTTACAGCCGGTGCTTGTCCTCAAAATTTTGTTTGGTGGCATGGCGGGAAATTTTCCAAATCTGTATTCCAGAAAGCTGTTTTGCCAAAAACCATGGCCAGAAAAGCAGCCCGACAAGGTGGTTCGAGGAAAATTTCTGGCATATTATATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGGTTGTTTGGAGAGCAGCAGTTCAAATTAGTAGGAATGCAACCCAGTTGGCCCTTCAGGTTCGATATCTAGATTTTCATATCAGATGGAATGATCTGATTCGTCCCGAGCACAACCTCCTAGATGTGAAAGGTCAAGATACTGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAAAAAAGAATTGTGGAGGGCAAAATTTTGTATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAACATGTTGAAGTAGAGCGAGGTCCTGAAGGAAAGGAAAAGTTCTGGTTTTCTGAAAAACGGATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGTAATGGAAAAATGCTATCTGATAAAGAGTACATGTACATTACATCTCAGTTGCACAAAAGGCAGTTGAAAGCTACTTACAAGGACATTTTTTTTTACCTTACCTGCAAGAGAGACAAATTGAACATGCTATCATGCTCTGTTTGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCTTGTAATGAGTCTCCAACCAGTCCCTTGCTCTTAGAAGGACAAGAACAAAGCACTTCAGCAGTTCTGAAGGGATCAGGGCCTAAATGTGATGGTCAAGAATTGATGTCTTCTAGGACAAAGAATAGTCGATCTGACACAAAACGATTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGAAGCAGAAATTGTTCTTGGGGTATTATTTGGAAAAAGAAGAACAACGAAGATACGGGCTTTGATTTCAGGCTCAAGAACATTCTTTTAAAAGGAGGTTCAGGCCTGCCTCAATTGGAACCTGTTTGTCGCTTGTGCCAAAAACCTTATAATTCTGATCTAATGTATATCTGCTGTGAAACATGTAAACGTAAGTTTTTTTACCAAGATTGGTACCATGCTGAAGCTGTGGAACTTGAAGAGTCCAGACTGTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCGCCTGTATGTCCTTTCTCTGATTTGAGTTACAGGACTCAAGAGGACAAGAGGTCTTCAAGGGCTTCAAAGAAAGATTACTTTGGGGGAGATTCTGATTCTGGTACACCTATTGACAGGAGCACATGTGAGCCTGCAACTCCTATCTGTCCTGCAGTGGATTTCTCTAGACAAGACAATGATCCTCTGCTGTTCTCCCTTTCAAGTGTTGAGCTGCTTGCAGAACCCGAGTTAGATGCAAATGGTGTGGGCAATACTGTCTCTGGGCCAGGACTTCCTAAGATATCTAAACGTGAGAGGGAGAATAATGGTTCTTTTAGAGGTAATCTTCACGCTGAGTTCTCAACCAGCAATGAGATGCTTTCCAAATCAGTAAAAGATTTATCCCCTTCTGTCGAAGATGCCTCTGCTAACTGCAGTCTTCTGAAGGACCCCGAAATTGTAAATTATCATGAGTTCGTGGATTTTGAACCTCATACCTACTTCTCACTGACTGAACTGCTCCACTCTGATGAGAATATTCAATCTGAGGAAACTGACGCTTCTCGGGTCTTCTCGGGTTGTTTGAAAAATTCTTCTTGTGTTCCCGAAGGATGCGGAACTGTTAATTTAGCATCCAACTGTGAGCCTACAAATTTGTTACAAGGAAATGTTTATAGTTGTCAGCAATGTTCACAAAAGGAACCGCTCCCTGATCTCCATTGTGAGATTTGTAGGATTTGGATTCACAGGCAGTGTTCACCTTGGGTGGAATCACCATCTCGGCTTGCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 3933 0.4315 MEPPVVRSRGRPRKRRREEDGTVAGDPKTFPEAKKAPPVALVGRYVLKEFRGNTVLLGKVVRYESGLYRVVYESGGFEDLDSIAIRRILLLDSYFDDDLIRRKGELEESVLPKIAEVRERGSSELHGDLLVESEEERDETDDESCSEARDLSSDSETPIPSAPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISPDGSRRATKCLRCIDWSLLDALTWPVFTFQYLAIYGYTKGPEWKGFYNEIFHGEYYLLSASRKLMILQILCDDVLASEEFKAEMNMREESEVGIDYDNEDSLPTEIGPRRVHPRYSKTTACKDSETKKYVSELNAEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPSIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLDVNSDEFCLKYYNQNDIPEVLQVLTASEQLRPIYNGICMAMLEYWKIPENFLSICVTSVPKVNLTNSNTDVKLSPMIEEKNQALEENIRTIAFCGDWVKLMDDWLAEFSTIQSAAVTLGTTQKGATCGRRKKQLSINKVTAGACPQNFVWWHGGKFSKSVFQKAVLPKTMARKAARQGGSRKISGILYADGSEIPKRSRQVVWRAAVQISRNATQLALQVRYLDFHIRWNDLIRPEHNLLDVKGQDTEASAFRNANIHEKRIVEGKILYRVAFGSQKHLPSRVMKHVEVERGPEGKEKFWFSEKRIPLYLVKEYEMRNGKMLSDKEYMYITSQLHKRQLKATYKDIFFYLTCKRDKLNMLSCSVCQLGVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKESCNESPTSPLLLEGQEQSTSAVLKGSGPKCDGQELMSSRTKNSRSDTKRFASDFPLETKGRSRNCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLEPVCRLCQKPYNSDLMYICCETCKRKFFYQDWYHAEAVELEESRLFDVLGFKCCKCRRIKSPVCPFSDLSYRTQEDKRSSRASKKDYFGGDSDSGTPIDRSTCEPATPICPAVDFSRQDNDPLLFSLSSVELLAEPELDANGVGNTVSGPGLPKISKRERENNGSFRGNLHAEFSTSNEMLSKSVKDLSPSVEDASANCSLLKDPEIVNYHEFVDFEPHTYFSLTELLHSDENIQSEETDASRVFSGCLKNSSCVPEGCGTVNLASNCEPTNLLQGNVYSCQQCSQKEPLPDLHCEICRIWIHRQCSPWVESPSRLASWRCGDCREWR 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4138g00018 1310 SMART testlast3 176 236 IPR018501 -
Vium4138g00018 1310 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Vium4138g00018 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Vium4138g00018 1310 CDD PHD_SF 1262 1306 - -
Vium4138g00018 1310 CDD PHD2_CHD_II 383 424 - -
Vium4138g00018 1310 MobiDBLite consensus disorder prediction 1057 1079 - -
Vium4138g00018 1310 Pfam PHD-finger 383 425 IPR019787 -
Vium4138g00018 1310 SUPERFAMILY FYVE/PHD zinc finger 981 1044 IPR011011 -
Vium4138g00018 1310 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 290 323 IPR028942 -
Vium4138g00018 1310 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
Vium4138g00018 1310 MobiDBLite consensus disorder prediction 128 169 - -
Vium4138g00018 1310 MobiDBLite consensus disorder prediction 1126 1150 - -
Vium4138g00018 1310 PANTHER PHD FINGER FAMILY PROTEIN 36 529 - -
Vium4138g00018 1310 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Vium4138g00018 1310 MobiDBLite consensus disorder prediction 904 930 - -
Vium4138g00018 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 976 1051 IPR013083 -
Vium4138g00018 1310 SUPERFAMILY FYVE/PHD zinc finger 375 430 IPR011011 -
Vium4138g00018 1310 SMART PHD_3 825 874 IPR001965 -
Vium4138g00018 1310 SMART PHD_3 1262 1307 IPR001965 -
Vium4138g00018 1310 SMART PHD_3 382 425 IPR001965 -
Vium4138g00018 1310 Pfam DDT domain 178 233 IPR018501 -
Vium4138g00018 1310 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4138g00018 Vium-Chr4138 125762 133470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4138g00018 267 517 EF-hand Containing Proteins AT5G22760 46.545 1.37e-70 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium4138g00018 DDT 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4138g00018 - - gmx:100794210 1263.06