Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4138g00016 ATGGAGCCTCCCGTTGTGAGATCTAGAGGTCGCCCGCGTAAACGGAGAAGAGAAGAGGACGGAACTGTCGCCGGCGATCCGAAAACGTTTCCTGAGGCGAAGAAGGCGCCTCCGGTTGCACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCGGGAACACGGTTCTTCTCGGCAAAGTCGTCCGCTACGAGAGCGGGTTGTACAGAGTCGTGTACGAGAGTGGCGGATTCGAGGACTTAGATAGCATCGCGATTCGTAGGATACTTCTCCTTGATAGCTATTTCGACGATGATTTAATTCGGAGGAAAGGCGAATTGGAGGAGTCGGTGTTGCCGAAGATTGCGGAGGTACGGGAGAGAGGTTCGAGCGAATTGCACGGCGATTTACTGGTTGAGAGCGAAGAAGAACGAGATGAAACGGACGACGAGTCGTGCAGCGAGGCTAGGGATTTGAGTTCCGATTCCGAAACGCCGATACCGTCTGCACCCACGCTGCCGCCTTCTTCTGGAACAATTGGCGTTCCGGAATCTTGCGTTCTGAATCTGCTTTCAGTGTACGGATTCCTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTAGACGAGTTTGTCGGTGCTTTGAACTGTAAAGTTTCTAACACGTTGCTTGATGCAATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCACCAGATGGTTCGCGGCGTGCAACAAAATGCCTTAGGTGCATTGATTGGAGTCTCCTTGATGCTTTGACTTGGCCTGTTTTTACGTTTCAGTATTTAGCAATTTATGGTTACACAAAGGGACCAGAGTGGAAAGGATTTTATAATGAAATTTTTCATGGCGAGTACTATTTATTGTCTGCAAGTAGGAAACTGATGATTTTGCAAATTCTCTGTGATGATGTTCTGGCATCTGAGGAGTTTAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAAGATAGCCTTCCTACTGAAATTGGGCCCAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACCAAGAAGTATGTTTCAGAATTGAATGCCGAGGATGTCGATGGCAATGGAGATGAATGCCGCTTGTGTGGCATGGATGGAACTTTACTTTGTTGTGATGGTTGTCCTGCAGTTTATCATTCAAGGTGTATTGGTGTGATGAAAATGCATATACCGGATGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTTCTATTGCACGGGGAACATCACTGAAAGGGGCTGAAGTATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGCACATGCGACCACTTACTGGTACTCGATGTCAACAGTGATGAATTTTGTCTTAAGTACTACAATCAGAATGACATTCCTGAAGTTCTCCAAGTCCTTACTGCATCTGAGCAACTTAGACCTATATACAATGGCATTTGCATGGCAATGTTAGAGTATTGGAAAATTCCAGAAAACTTCTTATCCATTTGTGTCACAAGTGTACCGAAAGTAAACTTAACAAATTCAAATACAGACGTGAAACTTTCTCCCATGATTGAAGAAAAGAATCAAGCTGTAAGTTCAGTGAAGGCAGAATACAGTTTAACATTTTCAAATGGAATTTGTAGTGATAATTTGGAACCATCTCTTGATGCTTCTTTGGTTACAAGTTGTGGTCCTGCTCCTGGAAGCAGGTACAATACGAGAACTACTGTGAATTTGAAGCTTTGTGAGGAAACTGCAATGAATTCGACATTTTCAATTGTTAACCATCAGTTCAATCCCAAGTTTGAAAATTCTGTTAATAAGTCAACTGCAGTCAGCCCTGCTAAGTGCACCTTTGTAAACAATCAATTTAATAATTATGGGCACACAAATGACTCAAGGCTGCCTATGAATTTGTCTTTGCAATCTAAAGGTGACCAATCTGGTTTTGGAAAGTGCAAAGGCAGTTTGACTAAGGATTTTATGTACACTGGTTTCTCCTATAAACCACAGTCATATATTAATTGCTATATGCATGGTGATTTTGCGGCATCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCTGAGGATTCCAGATCAGAGGGTCATGTGTCTGATAACTTGGGCAAAGCAACATCTGGAAACACTTATTTGCTTGCAAAAGCATTCTCCCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTATAGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCCTTTCTTGTAAAGCCCTTATTTCGAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCAGTAAGGATTGGAGAAGGAATCATCCCTAGCATTGCAACTTATGTTATATACATGGAGGAAAGTTTACGCGGTTTAATAGTTGGGCCCTTTATAAGTGAATGTTATAGAAGGCATTGGCGTAAACAAGTGGAACGGGCCACATCATTTAGTGATATAAAACCTCTTCTACTCAAACTCGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTAGCTGAATTTTCTACAATCCAAAGTGCTGCAGTTACTCTTGGAACTACACAGAAAGGTGCAACATGTGGGAGGCGTAAGAAACAGTTATCTATCAACAAAGTTACAGCCGGTGCTTGTCCTCAAAATTTTGTTTGGTGGCATGGCGGGAAATTTTCCAAATCTGTATTCCAGAAAGCTGTTTTGCCAAAAACCATGGCCAGAAAAGCAGCCCGACAAGGTGGTTCGAGGAAAATTTCTGGCATATTATATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGGTTGTTTGGAGAGCAGCAGTTCAAATTAGTAGGAATGCAACCCAGTTGGCCCTTCAGGTTCGATATCTAGATTTTCATATCAGATGGAATGATCTGATTCGTCCCGAGCACAACCTCCTAGATGTGAAAGGTCAAGATACTGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAAAAAAGAATTGTGGAGGGCAAAATTTTGTATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAACATGTTGAAGTAGAGCGAGGTCCTGAAGGAAAGGAAAAGTTCTGGTTTTCTGAAAAACGGATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGTAATGGAAAAATGCTATCTGATAAAGAGTACATGTACATTACATCTCAGTTGCACAAAAGGCAGTTGAAAGCTACTTACAAGGACATTTTTTTTTACCTTACCTGCAAGAGAGACAAATTGAACATGCTATCATGCTCTGTTTGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCTTGTAATGAGTCTCCAACCAGTCCCTTGCTCTTAGAAGGACAAGAACAAAGCACTTCAGCAGTTCTGAAGGGATCAGGGCCTAAATGTGATGGTCAAGAATTGATGTCTTCTAGGACAAAGAATAGTCGATCTGACACAAAACGATTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGAAGCAGAAATTGTTCTTGGGGTATTATTTGGAAAAAGAAGAACAACGAAGATACGGGCTTTGATTTCAGGCTCAAGAACATTCTTTTAAAAGGAGGTTCAGGCCTGCCTCAATTGGAACCTGTTTGTCGCTTGTGCCAAAAACCTTATAATTCTGATCTAATGTATATCTGCTGTGAAACATGTAAACGTAAGTTTTTTTACCAAGATTGGTACCATGCTGAAGCTGTGGAACTTGAAGAGTCCAGACTGTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCGCCTGTATGTCCTTTCTCTGATTTGAGTTACAGGACTCAAGAGGACAAGAGGTCTTCAAGGGCTTCAAAGAAAGATTACTTTGGGGGAGATTCTGATTCTGGTACACCTATTGACAGGAGCACATGTGAGCCTGCAACTCCTATCTGTCCTGCAGTGGATTTCTCTAGACAAGACAATGATCCTCTGCTGTTCTCCCTTTCAAGTGTTGAGCTGCTTGCAGAACCCGAGTTAGATGCAAATGGTGTGGGCAATACTGTCTCTGGGCCAGGACTTCCTAAGATATCTAAACGTGAGAGGGAGAATAATGGTTCTTTTAGAGGTAATCTTCACGCTGAGTTCTCAACCAGCAATGAGATGCTTTCCAAATCAGTAAAAGATTTATCCCCTTCTGTCGAAGATGCCTCTGCTAACTGCAGTCTTCTGAAGGACCCCGAAATTGTAAATTATCATGAGTTCGTGGATTTTGAACCTCATACCTACTTCTCACTGACTGAACTGCTCCACTCTGATGAGAATATTCAATCTGAGGAAACTGACGCTTCTCGGGTCTTCTCGGGTTGTTTGAAAAATTCTTCTTGTGTTCCCGAAGGATGCGGAACTGTTAATTTAGCATCCAACTGTGAGCCTACAAATTTGTTACAAGGAAATGTTTATAGTTGTCAGCAATGTTCACAAAAGGAACCGCTCCCTGATCTCCATTGTGAGATTTGTAGGATTTGGATTCACAGGCAGTGTTCACCTTGGGTGGAATCACCATCTCGGCTTGCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4872 0.4245 MEPPVVRSRGRPRKRRREEDGTVAGDPKTFPEAKKAPPVALVGRYVLKEFRGNTVLLGKVVRYESGLYRVVYESGGFEDLDSIAIRRILLLDSYFDDDLIRRKGELEESVLPKIAEVRERGSSELHGDLLVESEEERDETDDESCSEARDLSSDSETPIPSAPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISPDGSRRATKCLRCIDWSLLDALTWPVFTFQYLAIYGYTKGPEWKGFYNEIFHGEYYLLSASRKLMILQILCDDVLASEEFKAEMNMREESEVGIDYDNEDSLPTEIGPRRVHPRYSKTTACKDSETKKYVSELNAEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPSIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLDVNSDEFCLKYYNQNDIPEVLQVLTASEQLRPIYNGICMAMLEYWKIPENFLSICVTSVPKVNLTNSNTDVKLSPMIEEKNQAVSSVKAEYSLTFSNGICSDNLEPSLDASLVTSCGPAPGSRYNTRTTVNLKLCEETAMNSTFSIVNHQFNPKFENSVNKSTAVSPAKCTFVNNQFNNYGHTNDSRLPMNLSLQSKGDQSGFGKCKGSLTKDFMYTGFSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSEGHVSDNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLIEVPRERCGWCLSCKALISSKKGCMLNHAALSATKNAMKILSGLAPVRIGEGIIPSIATYVIYMEESLRGLIVGPFISECYRRHWRKQVERATSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTIQSAAVTLGTTQKGATCGRRKKQLSINKVTAGACPQNFVWWHGGKFSKSVFQKAVLPKTMARKAARQGGSRKISGILYADGSEIPKRSRQVVWRAAVQISRNATQLALQVRYLDFHIRWNDLIRPEHNLLDVKGQDTEASAFRNANIHEKRIVEGKILYRVAFGSQKHLPSRVMKHVEVERGPEGKEKFWFSEKRIPLYLVKEYEMRNGKMLSDKEYMYITSQLHKRQLKATYKDIFFYLTCKRDKLNMLSCSVCQLGVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKESCNESPTSPLLLEGQEQSTSAVLKGSGPKCDGQELMSSRTKNSRSDTKRFASDFPLETKGRSRNCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLEPVCRLCQKPYNSDLMYICCETCKRKFFYQDWYHAEAVELEESRLFDVLGFKCCKCRRIKSPVCPFSDLSYRTQEDKRSSRASKKDYFGGDSDSGTPIDRSTCEPATPICPAVDFSRQDNDPLLFSLSSVELLAEPELDANGVGNTVSGPGLPKISKRERENNGSFRGNLHAEFSTSNEMLSKSVKDLSPSVEDASANCSLLKDPEIVNYHEFVDFEPHTYFSLTELLHSDENIQSEETDASRVFSGCLKNSSCVPEGCGTVNLASNCEPTNLLQGNVYSCQQCSQKEPLPDLHCEICRIWIHRQCSPWVESPSRLASWRCGDCREWR 1623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4138g00016 1623 SMART testlast3 176 236 IPR018501 -
Vium4138g00016 1623 Pfam DDT domain 178 233 IPR018501 -
Vium4138g00016 1623 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Vium4138g00016 1623 CDD PHD2_CHD_II 383 424 - -
Vium4138g00016 1623 Pfam PHD-finger 383 425 IPR019787 -
Vium4138g00016 1623 CDD PHD_SF 1575 1619 - -
Vium4138g00016 1623 SUPERFAMILY FYVE/PHD zinc finger 375 430 IPR011011 -
Vium4138g00016 1623 MobiDBLite consensus disorder prediction 1439 1463 - -
Vium4138g00016 1623 MobiDBLite consensus disorder prediction 1370 1391 - -
Vium4138g00016 1623 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
Vium4138g00016 1623 SUPERFAMILY FYVE/PHD zinc finger 1294 1357 IPR011011 -
Vium4138g00016 1623 MobiDBLite consensus disorder prediction 128 169 - -
Vium4138g00016 1623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1289 1364 IPR013083 -
Vium4138g00016 1623 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Vium4138g00016 1623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Vium4138g00016 1623 SMART PHD_3 1138 1187 IPR001965 -
Vium4138g00016 1623 SMART PHD_3 382 425 IPR001965 -
Vium4138g00016 1623 SMART PHD_3 1575 1620 IPR001965 -
Vium4138g00016 1623 PANTHER PHD FINGER FAMILY PROTEIN 133 1586 - -
Vium4138g00016 1623 MobiDBLite consensus disorder prediction 1217 1243 - -
Vium4138g00016 1623 MobiDBLite consensus disorder prediction 1 30 - -
Vium4138g00016 1623 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 290 323 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4138g00016 Vium-Chr4138 125762 133472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4138g00016 267 562 EF-hand Containing Proteins AT5G22760 43.125 7.15e-71 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vium4138g00016 DDT 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4138g00016 - - gmx:100808614 2653.63