Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4138g00005 ATGGCGGAGGACCGGAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACTGAAGATTACAGGCGCGGAGGGTACCATGCGGTTCGAATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTACAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACACTAACAAATCGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAGGCGGCAATGGACGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAAAAATGTGTTGTAAAGCTTCTGGATAACTTTAAGCATTCAGGGCCCAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTTACCCTTATCAAGTATAGTGATTACCGAGGTGTTTCGCTTCCTGTGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCACCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTCTGTCTCCCATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAATGCTGTGACAAAAAATGGGATAACAATAGCCAATAAGAATGTTAATGGAGATCTAACCAAGAACCAGAAAAAGAAATTACGAAAAAAGGCTAAAAAGTTAGCCCAGGGCTGTGTTGGAAGGGAGCATGCCGAGGAAGCTGAGGAGGATTCTAAAGCACCTGATGAGCAAGATGATTGTAGTACTGATGTGAAGCCAAGTGTAGAATCTGGTGACAATAAACCTAATAGCCCTGGCAGTAAAGATGAATCATCAAAGACTTCTGAAAATAAGGATGTTCCCCAAGGAAGTCATGGGCACAGGAGAGGTAGCCGCTCTACAAGAAAGAAGTTGCTTGCATCTGTCGATCTTAAGTGCAAGCTAGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAAGTTCTTCTTGGATCTAAATATTCAACCCCAGCTGACCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACCGGAGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGACAGGGATGAGGATCATCTAGCACTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGTGATTTTTTCAACAGATATGGCGATTTGAGACACATCCGGCGATTGCGTTTCTGGCCTCTTAATAAGGTGATGATGGAGAAGTATGATTTCAGTGAAGAAGATGCTAATGGCATGGCTGAGTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACCGCTGCACAATGCCTTCAGCATTCATGGTTCAGTGCTGGTCCCCGGACTCTTGAGCCCTCAGTAACTACTTCACAGCATGCTGCAATTGACGGGGAAATATCTGAAAAGATGCAGAGGGAAAAAGAGCAGGAGGGTGTGGAAGTTGGTATGGGGAATATGGCCATAGATGGAAATTCAAAACAACTCTAA 1605 0.4374 MAEDRSEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTNKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDNFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVSLPVVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDNAVTKNGITIANKNVNGDLTKNQKKKLRKKAKKLAQGCVGREHAEEAEEDSKAPDEQDDCSTDVKPSVESGDNKPNSPGSKDESSKTSENKDVPQGSHGHRRGSRSTRKKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVMMEKYDFSEEDANGMAEFLLPLLDFVPEKRPTAAQCLQHSWFSAGPRTLEPSVTTSQHAAIDGEISEKMQREKEQEGVEVGMGNMAIDGNSKQL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4138g00005 534 FunFam Serine/threonine-protein kinase SRPK-like protein 312 482 - -
Vium4138g00005 534 Pfam Protein kinase domain 317 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4138g00005 534 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4138g00005 534 CDD STKc_SRPK 29 482 - -
Vium4138g00005 534 FunFam CMGC/SRPK protein kinase 26 125 - -
Vium4138g00005 534 MobiDBLite consensus disorder prediction 238 253 - -
Vium4138g00005 534 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Vium4138g00005 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vium4138g00005 534 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4138g00005 534 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 504 - -
Vium4138g00005 534 Gene3D Transferase(Phosphotransferase) domain 1 123 483 - -
Vium4138g00005 534 SUPERFAMILY Protein kinase-like (PK-like) 35 493 IPR011009 -
Vium4138g00005 534 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4138g00005 534 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Vium4138g00005 534 MobiDBLite consensus disorder prediction 224 311 - -
Vium4138g00005 534 MobiDBLite consensus disorder prediction 287 302 - -
Vium4138g00005 534 MobiDBLite consensus disorder prediction 269 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4138g00005 Vium-Chr4138 46003 49834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4138g00005 6 533 EF-hand Containing Proteins AT5G22840 68.856 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vium4138g00005 Pkinase 6.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4138g00005 K08832 - gmx:100791829 981.089