Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4136g00006 ATGGAATTCAACAAGTTCAGAATCAGAAGCTACGAGGGGCAATATGATAGGGCTCAAGTGGAAGATCTTGAGAGAAGATGCGAGGTAGGGCCATCAGAAAGCGTGTTCCTCTTCACAGACACTATGGGTGACCCCATTTGTAGGATTCGGAACAGTCCAATGTACATGATGCTGGTGGCAGAGTTGGAGAATGAACTGGTTGGTGTGATTCAAGGGTCTATAAAGCTGGTGACGGTTCATGGTCATCCTCCGAAGGATTTGGCAAAGGTGGGGTATGTCCTTGGCCTAAGGGTATCACCCCATCACAGGAGAAAAGGGATTGGCTCGAGCCTTGTGAGAAGGCTAGAAGAATGGTTCAGTTCAAAGGATGTGGACTATGCATATATGGCAACAGAGAAAGACAACCAAGCCTCGGTCAGTCTCTTTATGGACAAGTTTGGCTACACCAAGTTTAGGACTCCAGCTATTCTTGTGAACCCTGTGAACCATCATTGCTTTCAAATATCAGCCAACATTGAGATAGCAAGGTTGAAGGTTGACCAAGCTGAATACCTCTACAGAAGATTCATGGGGTCCACAGAGTTTTTTCCCAATGACATAGGCAACATACTTAGGAACAAGCTAAGTTTGGGGACATGGGTAGCCTATTTCAAGGGAGATATTGGTTGGGGGGATTTTGGGTCAGATGGACAAGTCCCTAATAGTTGGGCAATGCTCAGTGTATGGAACAGTGGAGAGATATTCAAGCTGAGGCTAGGAAAAGCACCATTTTCTTGCTTGTTGTGCACCAAGAGTTGGTGGTTGATTGATAAAATCTTCCCATGTTTGAAACTTCCAATCATACCTGATTTCTTCAACCCATTTGGGTTCTATTTCATGTATGGGGTGCACCATGAAGGGCCATTCTCAGGGAAGCTGGTGAGAGCCTTGTGCCAATTCGTACACAACATGGCTGCAGAATCAAAGGATGAGAATTGCAAGATCATTGTCACTGAAGTTGGTGGAAGAGACGAGCTCAACCATCATATTCCACATTGGAAATTGCTCTCATGCCCAGAGGACTTGTGGTGCATAAAGCCTTTGAAAAATGAAGGGACAAATAACAAGTTCCATGAATTAACCAAAACCCCACCAACAAGAGCTCTTTTTGTAGACCCAAGAGAGGTTTAG 1170 0.4487 MEFNKFRIRSYEGQYDRAQVEDLERRCEVGPSESVFLFTDTMGDPICRIRNSPMYMMLVAELENELVGVIQGSIKLVTVHGHPPKDLAKVGYVLGLRVSPHHRRKGIGSSLVRRLEEWFSSKDVDYAYMATEKDNQASVSLFMDKFGYTKFRTPAILVNPVNHHCFQISANIEIARLKVDQAEYLYRRFMGSTEFFPNDIGNILRNKLSLGTWVAYFKGDIGWGDFGSDGQVPNSWAMLSVWNSGEIFKLRLGKAPFSCLLCTKSWWLIDKIFPCLKLPIIPDFFNPFGFYFMYGVHHEGPFSGKLVRALCQFVHNMAAESKDENCKIIVTEVGGRDELNHHIPHWKLLSCPEDLWCIKPLKNEGTNNKFHELTKTPPTRALFVDPREV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4136g00006 389 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 6 162 IPR000182 GO:0016747
Vium4136g00006 389 CDD NAT_SF 57 128 - -
Vium4136g00006 389 Gene3D - 16 155 - -
Vium4136g00006 389 Pfam Acetyltransferase (GNAT) family 47 148 IPR000182 GO:0016747
Vium4136g00006 389 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 4 389 - -
Vium4136g00006 389 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 16 152 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4136g00006 Vium-Chr4136 72628 75456 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium4136g00006 Acetyltransf_1 1.9e-16 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4136g00006 - - gmx:100799507 779.245