Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4132g00012 ATGTCACCGGTTGGATTACCACCAGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATTGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCCAGTAGAGATCCAGAGTGGTACTTTTTTGGACCCCGGGATAGGAAATACCCGAATGGGTTTAGAACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAAAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTGTACTATAGAGGCAGAGCTCCTCAAGGAATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGATTACAGGATACTTATGCATTGTGCCGGGTGTTCAAGAAAAATGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATATCACTCATTGAGAGCTGCCAAACCATGATTAATGAGTGTGATACCATGTCTCCTGACATACCAGGCGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 714 0.4216 MSPVGLPPGFRFHPTDEELVNYYLKRKINCQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESCQTMINECDTMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4132g00012 237 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vium4132g00012 237 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vium4132g00012 237 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 176 - -
Vium4132g00012 237 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Vium4132g00012 237 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vium4132g00012 237 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4132g00012 Vium-Chr4132 30767 34623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4132g00012 1 226 NAC Transcription Factor Family AT3G17730 75.519 3.64e-131 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4132g00012 NAM 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4132g00012 - - gmx:100784495 489.574