Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4132g00011 ATGTCACCGGTTGGATTACCACCAGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATTGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAAAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTGTACTATAGAGGCAGAGCTCCTCAAGGAATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGATTACAGGATACTTATGCATTGTGCCGGGTGTTCAAGAAAAATGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATATCACTCATTGAGAGCTGCCAAACCATGATTAATGAGTGTGATACCATGTCTCCTGACATACCAGGCGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 612 0.4199 MSPVGLPPGFRFHPTDEELVNYYLKRKINCQEIELDIIPEVDLYKCEPWELAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESCQTMINECDTMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4132g00011 203 Gene3D NAC domain 53 125 IPR036093 GO:0003677|GO:0006355
Vium4132g00011 203 Gene3D NAC domain 15 52 IPR036093 GO:0003677|GO:0006355
Vium4132g00011 203 Pfam No apical meristem (NAM) protein 53 99 IPR003441 GO:0003677|GO:0006355
Vium4132g00011 203 Pfam No apical meristem (NAM) protein 7 52 IPR003441 GO:0003677|GO:0006355
Vium4132g00011 203 SUPERFAMILY NAC domain 4 123 IPR036093 GO:0003677|GO:0006355
Vium4132g00011 203 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 51 - -
Vium4132g00011 203 ProSiteProfiles NAC domain profile. 1 122 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4132g00011 Vium-Chr4132 30753 34626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4132g00011 1 192 NAC Transcription Factor Family AT3G17730 61.826 9.79e-97 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4132g00011 NAM 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4132g00011 - - gmx:100784495 399.053