Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4132g00004 ATGAGATTGCCTATCTTTCTTTTCCTTTATTTCCATTATCCTTTCATTGGAGGAAAGTTATTGATTCATCAACTACTACTAATGTAGGATCAAATAGAAAACACAAGATCAACCATATCAGGCTCAGCTAGTAACTGCCATTCAAATGCTGGAAAACAATCTGAAAATGTTGCTCATGTACCTTCTGTCGGAAACGGCCATGCTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTTAGGGAATCTGAGGGAAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCACCCATATCCTCGAAAATCAGTTGATGCTTTCAGAGGACATGCCATACCAAATGAAACTGAAACATCTCAATCCACAAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCGACCTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCGCCAAACTCTTGCACAACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAAAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCTGACCCAAACATGTGCATGAAGCCCGAATTTAGTTCCAAGGAAACTGAATATGGTATAGATGATTCGGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACGGTATCTATGGTAGACAATCAGAAGCCGCAGAACATAGATGACAACGGTAAGGCAATAATAACTGTTAAGTCTGATGAAGTGGATGATGCTGGGAATGAGAAGCCTGGCCAATCAACTGAGCAAGTAGATACACAATTATCACTAGGCTTGGTTGGTGGCAACTGGTCCATAACACCTGATTCTGATGGAGCTGATCGCAGCGAAGAGCCACCGAAGGAGAACGTGTGCCTCAGTGAATGTGTACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTCCCAGCTTTCTGTGTAAGCCCATGCAATCAGATCCTAAATCACATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGTACTGGTTCCAACACAGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTGAAAAATATGAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAGAGGGTTTGTTCCATATAAAAGATGTTTGGCCGAAAGAGATGGAACTTCTTTAATTGCGGCCTTGGAAGAGAGGGACGGGCAACGAGCTCGTGTGTGCTCATAG 1506 0.4363 MRLPIFLFLYFHYPFIGGKLLIHQLLLMXDQIENTRSTISGSASNCHSNAGKQSENVAHVPSVGNGHAPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVDAFRGHAIPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSDPNMCMKPEFSSKETEYGIDDSANMPQTTSIKLFGRTVSMVDNQKPQNIDDNGKAIITVKSDEVDDAGNEKPGQSTEQVDTQLSLGLVGGNWSITPDSDGADRSEEPPKENVCLSECVPDASFPQWSLYQGLPAFCVSPCNQILNHMPLRPSLKVRAREEESCCTGSNTESVCDMENQGKNSDAVDSKCEKYEGEGAAPQKPARGFVPYKRCLAERDGTSLIAALEERDGQRARVCS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4132g00004 501 Gene3D - 83 130 - -
Vium4132g00004 501 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Vium4132g00004 501 MobiDBLite consensus disorder prediction 236 273 - -
Vium4132g00004 501 PANTHER SWI/SNF COMPLEX-RELATED 46 310 - -
Vium4132g00004 501 SUPERFAMILY Homeodomain-like 75 129 IPR009057 -
Vium4132g00004 501 SMART sant 80 128 IPR001005 -
Vium4132g00004 501 MobiDBLite consensus disorder prediction 352 373 - -
Vium4132g00004 501 CDD SANT 83 126 IPR001005 -
Vium4132g00004 501 ProSiteProfiles SANT domain profile. 79 130 IPR017884 -
Vium4132g00004 501 FunFam protein REVEILLE 6 isoform X1 83 131 - -
Vium4132g00004 501 MobiDBLite consensus disorder prediction 136 162 - -
Vium4132g00004 501 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Vium4132g00004 501 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 128 IPR006447 GO:0003677
Vium4132g00004 501 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4132g00004 Vium-Chr4132 9439 12963 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium4132g00004 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4132g00004 - - vum:124836796 989.949