Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4132g00003 ATGGCAAACATGGTCTTTGTTGGTGTTAAGGTTGCTGCTGTTTCTCTACCACCATTACCCATTACAAACAAAGCTCTAACTTTTAGTTTCACCCAGAAGAGACACTTCCTTCTCCTGAATTGCTCCCGAACCAATAACAGAACATTGTCTTTCTCTTCTTCCTTCTCAATTTCATCATCTCCCCTCACAAACAAGGGTGGTTGTTCTGTGTTGGCTTGTCTCCCTCCTGCTTCGTCTGAATCCTCAACCTCATCATCTTCCACTGCTAAACCCTCTTCCACTTTCCCTTCAACTAAGCTTTATGTCAGTGGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTACGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTTTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACCGCAGCGGAACAGGCAAGGCACAAGATTGTTGTAA 576 0.4306 MANMVFVGVKVAAVSLPPLPITNKALTFSFTQKRHFLLLNCSRTNNRTLSFSSSFSISSSPLTNKGGCSVLACLPPASSESSTSSSSTAKPSSTFPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQRNRQGTRLL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4132g00003 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Vium4132g00003 191 SMART rrm1_1 99 172 IPR000504 GO:0003723
Vium4132g00003 191 PANTHER NUCLEOLAR PROTEIN 8 80 184 - -
Vium4132g00003 191 Gene3D - 76 189 IPR012677 -
Vium4132g00003 191 FunFam Organelle RRM domain-containing protein 6, chloroplastic 82 189 - -
Vium4132g00003 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 169 IPR000504 GO:0003723
Vium4132g00003 191 SUPERFAMILY RNA-binding domain, RBD 89 188 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4132g00003 Vium-Chr4132 6774 9206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4132g00003 84 186 Eukaryotic Initiation Factors Gene Family AT3G16380 34.951 1.12e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4132g00003 - - gmx:100305561 242.662