Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4132g00002 ATGGAAATGCAGGATCAAATAGAAAACACAAGATCAACCATATCAGGCTCAGCTAGTAACTGCCATTCAAATGCTGGAAAACAATCTGAAAATGTTGCTCATGTACCTTCTGTCGGAAACGGCCATGCTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTTAGGGAATCTGAGGGAAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCACCCATATCCTCGAAAATCAGTTGATGCTTTCAGAGGACATGCCATACCAAATGAAACTGAAACATCTCAATCCACAAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCGACCTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCGCCAAACTCTTGCACAACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAAAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCTGACCCAAACATGTGCATGAAGCCCGAATTTAGTTCCAAGGAAACTGAATATGGTATAGATGATTCGGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACGGTATCTATGGTAGACAATCAGAAGCCGCAGAACATAGATGACAACGGTAAGGCAATAATAACTGTTAAGTCTGATGAAGTGGATGATGCTGGGAATGAGAAGCCTGGCCAATCAACAGAGCAAGTAGATACACAATTATCACTAGGCTTGGTTGGTGGCAACTGGTCCATAACACCTGATTCTGATGGAGCTGATCGCAGCGAAGAGCCACCGAAGGAGAACGTGTGCCTCAGTGAATGTGTACCAGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTCCCAGCTTTCTGTGTAAGCCCATGCAATCAGATCCTAAATCACATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGTACTGGTTCCAACACAGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTGAAAAATATGAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAGAGGGTTTGTTCCATATAAAAGATGTTTGGCCGAAAGAGATGGAACTTCTTTAATTGCGGCCTTGGAAGAGAGGGACGGGCAACGAGCTCGTGTGTGCTCATAG 1431 0.4437 MEMQDQIENTRSTISGSASNCHSNAGKQSENVAHVPSVGNGHAPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVDAFRGHAIPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSDPNMCMKPEFSSKETEYGIDDSANMPQTTSIKLFGRTVSMVDNQKPQNIDDNGKAIITVKSDEVDDAGNEKPGQSTEQVDTQLSLGLVGGNWSITPDSDGADRSEEPPKENVCLSECVPDASFPQWSLYQGLPAFCVSPCNQILNHMPLRPSLKVRAREEESCCTGSNTESVCDMENQGKNSDAVDSKCEKYEGEGAAPQKPARGFVPYKRCLAERDGTSLIAALEERDGQRARVCS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4132g00002 476 FunFam protein REVEILLE 6 isoform X1 58 106 - -
Vium4132g00002 476 Gene3D - 58 105 - -
Vium4132g00002 476 MobiDBLite consensus disorder prediction 209 242 - -
Vium4132g00002 476 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vium4132g00002 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vium4132g00002 476 MobiDBLite consensus disorder prediction 1 51 - -
Vium4132g00002 476 MobiDBLite consensus disorder prediction 107 134 - -
Vium4132g00002 476 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Vium4132g00002 476 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Vium4132g00002 476 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Vium4132g00002 476 PANTHER SWI/SNF COMPLEX-RELATED 21 288 - -
Vium4132g00002 476 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Vium4132g00002 476 MobiDBLite consensus disorder prediction 328 348 - -
Vium4132g00002 476 CDD SANT 58 101 IPR001005 -
Vium4132g00002 476 SMART sant 55 103 IPR001005 -
Vium4132g00002 476 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4132g00002 Vium-Chr4132 1984 6542 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium4132g00002 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4132g00002 - - vum:124836796 934.48