Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4121g00011 | ATGGAGGATTATCATGTTGCCAAGTTTGCTCAGATAAAAGACAATGAATTGGGTTTATTTGCTATCTATGATGGCCATTTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTCTGCGGGAGGAGGAATTTTGGGAAGACCCCACTCTTTCCATCTCAAAAGCTTACGAGATCACAGATCAGGAAATTCTATCAAACAGTTCTGACCTTGGGCGTGGTGGATCAACAGCCGTAACTGCTATATTGATCAATGGGCGAAGGTTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCTAGAAAAGGTCAAGCTTTACAAATGACTATAGACCACGAGCCAAACATGGAACGAGGCAGCATTGAGAATAGAGGTGGCTTTGTCTCTAATTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTTGCTGTTTCTCGAGCATTTGGTGACAAGAGTCTCAAGTCACATTTGCGATCAGACCCTGACGTGCAGAACACTGACATAGATGTTGATACTGAGATTCTAATAATTGCAAGTGATGGACTTTGGAAGGTAATGACTAATCAAGACGCTGTGGATATTGCTAGAAGATCGAAAGACCCACAGAAGGCAGCTAAGCAACTTACTGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGGTGA | 708 | 0.4195 | MEDYHVAKFAQIKDNELGLFAIYDGHLGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYEITDQEILSNSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQALQMTIDHEPNMERGSIENRGGFVSNLPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQNTDIDVDTEILIIASDGLWKVMTNQDAVDIARRSKDPQKAAKQLTAEALKRDSKDDISCVVVKFR | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4121g00011 | 235 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 234 | IPR001932 | - | |
| Vium4121g00011 | 235 | PANTHER | PROTEIN PHOSPHATASE | 1 | 234 | IPR015655 | GO:0004722|GO:0006470 | |
| Vium4121g00011 | 235 | SUPERFAMILY | PP2C-like | 1 | 234 | IPR036457 | - | |
| Vium4121g00011 | 235 | Pfam | Protein phosphatase 2C | 1 | 227 | IPR001932 | - | |
| Vium4121g00011 | 235 | CDD | PP2Cc | 1 | 234 | IPR001932 | - | |
| Vium4121g00011 | 235 | SMART | PP2C_4 | 1 | 232 | IPR001932 | - | |
| Vium4121g00011 | 235 | SMART | PP2C_SIG_2 | 1 | 234 | IPR001932 | - | |
| Vium4121g00011 | 235 | FunFam | Probable protein phosphatase 2C 39 | 1 | 235 | - | - | |
| Vium4121g00011 | 235 | Gene3D | - | 1 | 235 | IPR036457 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4121g00011 | Vium-Chr4121 | 93852 | 97265 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4121g00011 | 1 | 235 | PP2C-type Phosphatase Gene Family | AT1G22280 | 74.689 | 2.98e-134 | 377 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4121g00011 | K17506 | - | gmx:100797292 | 446.047 |