Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4121g00010 ATGGATAAGTTGTGCTGTTTTAAGGCTTCCTACTCTCAGCTTGTAGCAGCACGTTCTTCATCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCCAAGTTTGCTCAGATAAAAGACAATGAATTGGGTTTATTTGCTATCTATGATGGCCATTTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTCTGCGGGAGGAGGAATTTTGGGAAGACCCCACTCTTTCCATCTCAAAAGCTTACGAGATCACAGATCAGGAAATTCTATCAAACAGTTCTGACCTTGGGCGTGGTGGATCAACAGCCGTAACTGCTATATTGATCAATGGGCGAAGGTTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCTAGAAAAGGTCAAGCTTTACAAATGACTATAGACCACGAGCCAAACATGGAACGAGGCAGCATTGAGAATAGAGGTGGCTTTGTCTCTAATTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTTGCTGTTTCTCGAGCATTTGGTGACAAGAGTCTCAAGTCACATTTGCGATCAGACCCTGACGTGCAGAACACTGACATAGATGTTGATACTGAGATTCTAATAATTGCAAGTGATGGACTTTGGAAGGTAATGACTAATCAAGACGCTGTGGATATTGCTAGAAGATCGAAAGACCCACAGAAGGCAGCTAAGCAACTTACTGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGGTGA 849 0.4205 MDKLCCFKASYSQLVAARSSSSTGKGKNHEGSIKYGFSLVKGKANHPMEDYHVAKFAQIKDNELGLFAIYDGHLGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYEITDQEILSNSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQALQMTIDHEPNMERGSIENRGGFVSNLPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQNTDIDVDTEILIIASDGLWKVMTNQDAVDIARRSKDPQKAAKQLTAEALKRDSKDDISCVVVKFR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4121g00010 282 SUPERFAMILY PP2C-like 32 281 IPR036457 -
Vium4121g00010 282 SMART PP2C_SIG_2 45 281 IPR001932 -
Vium4121g00010 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Vium4121g00010 282 FunFam Probable protein phosphatase 2C 39 25 282 - -
Vium4121g00010 282 Gene3D - 29 282 IPR036457 -
Vium4121g00010 282 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Vium4121g00010 282 CDD PP2Cc 33 281 IPR001932 -
Vium4121g00010 282 SMART PP2C_4 30 279 IPR001932 -
Vium4121g00010 282 PANTHER PROTEIN PHOSPHATASE 27 281 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4121g00010 Vium-Chr4121 93852 97305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4121g00010 1 282 PP2C-type Phosphatase Gene Family AT1G22280 73.264 1.15e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4121g00010 K17506 - gmx:100797292 541.191