Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4121g00001 ATGAGTGAGACAGCCAGTCTTCATGCACAGACAAGGACACCCATTTCTTCTCTTGAAGCCATGGCTCATCATCACCCGCATTATCGGTCACCCTTCGGAGACACTACCTTCACCAAACTCTTCGTCGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGGGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGTTTCGTAACATTCTGCGACCAAGAATCGGCAAGAAGAGCATGTGCTGATCCAAATCCAATAATAGATGGCAGAAGAGCAAATTGCAATATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCTCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGAACAACAGTACAGAGTGTTCCGGGAGCGGGAGCGCCGCCGTCGCTGCCGCCAGCACCTGCTGTTCTGTATCCGCCATATGGCTACGCAGCCTACACTCCCGATTATGGATACCACCACCAAGCGACATTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAAGTCTACGGAGCATCATCTTCCACCATGAGCACCCCGTATTACTATGGTTACTCTGTGCAAGCACCAAGAAACACATTTTCCTCACCCCAGGCAAATCGTCTATCACCTGGACCATCTTATCTGTACTATCCTACACCCGTGGAAGTCTCATTCTCTGCATATCGCCCACTCCAATCACCAGTGACCCAAAGCTTTCCTTCTCCAACTGATTCACAGAGCCAGCAGCGTATCTCCTCTGAAACAGCAGCCACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTAA 855 0.4936 MSETASLHAQTRTPISSLEAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTTVQSVPGAGAPPSLPPAPAVLYPPYGYAAYTPDYGYHHQATLYNPQIQQPQYYQQVYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPTPVEVSFSAYRPLQSPVTQSFPSPTDSQSQQRISSETAATSESSNTQGKN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4121g00001 284 Gene3D - 5 134 IPR012677 -
Vium4121g00001 284 PANTHER BOULE-RELATED 16 266 - -
Vium4121g00001 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Vium4121g00001 284 SUPERFAMILY RNA-binding domain, RBD 21 133 IPR035979 GO:0003676
Vium4121g00001 284 SMART rrm1_1 39 111 IPR000504 GO:0003723
Vium4121g00001 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Vium4121g00001 284 CDD RRM_RBM24_RBM38_like 38 113 - -
Vium4121g00001 284 MobiDBLite consensus disorder prediction 249 284 - -
Vium4121g00001 284 FunFam RNA-binding protein 24-B isoform X1 25 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4121g00001 Vium-Chr4121 5627 10001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4121g00001 34 114 C2H2 Transcription Factor Family AT2G19380 38.272 5.92e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4121g00001 K25006 - gmx:100811977 467.233