Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4118g00009 ATGAAGCCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTGCATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAGGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTCCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACACAGCAAACAAAAGTTAGAGAACACCAACAACTTCAAATACAGCAGATGCAGCTAATGCAGCAACGCAATGCACAATTACAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAACTCTGAAGGAATGTTGGGACAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACATCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCACCAAATTCCTGGGCGAACTCCTTTGACCACTGACATAAAAACAGAAGTTAATTTAGGGGCCCCTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCAGGGCTAGGGAGTGCAGGATTAAATCAAGGTGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTCATGTCATCACAACAGCAACAGGTCTTGACTCAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTGAGTGCAAAGGATGGTCAATCTACCAGGAACGATGGATCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGCAGATGAAGATGGCCCAGTCACAACATTCATTATCTCAACAACAGGAGCAATTACAGCAGCATCAACTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTGGAGCTGCCAATAGCACTGGCACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCCTCCAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTATCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCAGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAAGTTAGTAGCATAAGATCGAGGAACAGCAAAGTTACGTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAACATGGACACTTTTAAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTATAGACCAAATTCACTTCAGGTGGCAACTGCCTCAATGGATAAATGTGTGCGGTTATGGGACACAACAAATCCTAACCGCTGTGTACAAGAATATAGTGGGCACTCTTCACCTATAGTGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGCGATGGAGAAAATGAAATTCGGTATTGGAATATTAACTCTCCCAACAGCATGCGAGCAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGACTGGGGCATTTACTAGCAGCAGGTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACAAAAATCTACTCCCTGCAGGGTCATCCTGATCCAGTGAGCTATATTTGCTGGGATGGAAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCGTTCAAGAGATCAGCTCTACTGGAAGCGGATTCCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATTTTCGTGCTTAGAGTTATGGAACATGAGCGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATATCTAGCATGGCTCAGTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTTTGACAACTATGTAAAGGTGTGGAAATAA 2349 0.4215 MKPTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKVREHQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSINAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALHQIPGRTPLTTDIKTEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKQMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSMMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEVSSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWNMDTFKTENSPAEHKAVITDVRYRPNSLQVATASMDKCVRLWDTTNPNRCVQEYSGHSSPIVSLDFHPKKTELFCFCDGENEIRYWNINSPNSMRATKGGNTQVRFQPRLGHLLAAGSDKGVSIFDVESDTKIYSLQGHPDPVSYICWDGNGEALASVSLNMVKIWSLNSGECVQEISSTGSGFHSCVFHPSYSTLLVIGGFSCLELWNMSENKSMTIPAHENVISSMAQSSVTGMVASASFDNYVKVWK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4118g00009 782 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Vium4118g00009 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Vium4118g00009 782 Pfam WD domain, G-beta repeat 581 619 IPR001680 GO:0005515
Vium4118g00009 782 Pfam WD domain, G-beta repeat 545 575 IPR001680 GO:0005515
Vium4118g00009 782 Pfam WD domain, G-beta repeat 506 533 IPR001680 GO:0005515
Vium4118g00009 782 CDD WD40 497 782 - -
Vium4118g00009 782 Gene3D - 628 782 IPR015943 GO:0005515
Vium4118g00009 782 SMART WD40_4 579 619 IPR001680 GO:0005515
Vium4118g00009 782 SMART WD40_4 743 782 IPR001680 GO:0005515
Vium4118g00009 782 SMART WD40_4 494 533 IPR001680 GO:0005515
Vium4118g00009 782 SMART WD40_4 702 741 IPR001680 GO:0005515
Vium4118g00009 782 SMART WD40_4 623 658 IPR001680 GO:0005515
Vium4118g00009 782 SMART WD40_4 536 575 IPR001680 GO:0005515
Vium4118g00009 782 SMART WD40_4 661 699 IPR001680 GO:0005515
Vium4118g00009 782 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Vium4118g00009 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Vium4118g00009 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Vium4118g00009 782 MobiDBLite consensus disorder prediction 323 415 - -
Vium4118g00009 782 MobiDBLite consensus disorder prediction 467 490 - -
Vium4118g00009 782 SMART Lish 14 46 IPR006594 GO:0005515
Vium4118g00009 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 782 IPR001680 GO:0005515
Vium4118g00009 782 Gene3D - 282 627 IPR015943 GO:0005515
Vium4118g00009 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Vium4118g00009 782 Pfam LisH 16 41 IPR006594 GO:0005515
Vium4118g00009 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Vium4118g00009 782 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 782 IPR044716 GO:0003714
Vium4118g00009 782 SUPERFAMILY WD40 repeat-like 492 782 IPR036322 GO:0005515
Vium4118g00009 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 536 - -
Vium4118g00009 782 Coils Coil 351 378 - -
Vium4118g00009 782 MobiDBLite consensus disorder prediction 301 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4118g00009 Vium-Chr4118 140708 149328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4118g00009 583 781 Miscellaneous Gene Families AT5G08390 24.878 6.15e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium4118g00009 WD40 0.015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4118g00009 - - gmx:100799686 1291.17