Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4118g00008 ATGAAGCCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTGCATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAGGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTCCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACACAGCAAACAAAAGTTAGAGAACACCAACAACTTCAAATACAGCAGATGCAGCTAATGCAGCAACGCAATGCACAATTACAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAACTCTGAAGGAATGTTGGGACAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACATCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCACCAAATTCCTGGGCGAACTCCTTTGACCACTGACATAAAAACAGAAGTTAATTTAGGGGCCCCTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCAGGGCTAGGGAGTGCAGGATTAAATCAAGGTGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTCATGTCATCACAACAGCAACAGGTCTTGACTCAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTGAGTGCAAAGGATGGTCAATCTACCAGGAACGATGGATCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGATGAAGATGGCCCAGTCACAACATTCATTATCTCAACAACAGGAGCAATTACAGCAGCATCAACTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTGGAGCTGCCAATAGCACTGGCACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCCTCCAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTATCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCAGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAAGTTAGTAGCATAAGATCGAGGAACAGCAAAGTTACGTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAACATGGACACTTTTAAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTATAGACCAAATTCACTTCAGGTGGCAACTGCCTCAATGGATAAATGTGTGCGGTTATGGGACACAACAAATCCTAACCGCTGTGTACAAGAATATAGTGGGCACTCTTCACCTATAGTGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGCGATGGAGAAAATGAAATTCGGTATTGGAATATTAACTCTCCCAACAGCATGCGAGCAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGACTGGGGCATTTACTAGCAGCAGGTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACAAAAATCTACTCCCTGCAGGGTCATCCTGATCCAGTGAGCTATATTTGCTGGGATGGAAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCGTTCAAGAGATCAGCTCTACTGGAAGCGGATTCCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATTTTCGTGCTTAGAGTTATGGAACATGAGCGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATATCTAGCATGGCTCAGTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTTTGACAACTATGTAAAGGTGTGGAAATAA 2346 0.4211 MKPTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKVREHQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSINAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALHQIPGRTPLTTDIKTEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSMMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEVSSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWNMDTFKTENSPAEHKAVITDVRYRPNSLQVATASMDKCVRLWDTTNPNRCVQEYSGHSSPIVSLDFHPKKTELFCFCDGENEIRYWNINSPNSMRATKGGNTQVRFQPRLGHLLAAGSDKGVSIFDVESDTKIYSLQGHPDPVSYICWDGNGEALASVSLNMVKIWSLNSGECVQEISSTGSGFHSCVFHPSYSTLLVIGGFSCLELWNMSENKSMTIPAHENVISSMAQSSVTGMVASASFDNYVKVWK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4118g00008 781 Coils Coil 350 377 - -
Vium4118g00008 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Vium4118g00008 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 627 IPR001680 GO:0005515
Vium4118g00008 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Vium4118g00008 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Vium4118g00008 781 SUPERFAMILY WD40 repeat-like 491 781 IPR036322 GO:0005515
Vium4118g00008 781 MobiDBLite consensus disorder prediction 301 414 - -
Vium4118g00008 781 Gene3D - 282 626 IPR015943 GO:0005515
Vium4118g00008 781 Gene3D - 627 781 IPR015943 GO:0005515
Vium4118g00008 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Vium4118g00008 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 574 IPR001680 GO:0005515
Vium4118g00008 781 SMART Lish 14 46 IPR006594 GO:0005515
Vium4118g00008 781 Pfam WD domain, G-beta repeat 580 618 IPR001680 GO:0005515
Vium4118g00008 781 Pfam WD domain, G-beta repeat 544 574 IPR001680 GO:0005515
Vium4118g00008 781 Pfam WD domain, G-beta repeat 505 532 IPR001680 GO:0005515
Vium4118g00008 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 781 - -
Vium4118g00008 781 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Vium4118g00008 781 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 781 IPR044716 GO:0003714
Vium4118g00008 781 Pfam LisH 16 41 IPR006594 GO:0005515
Vium4118g00008 781 SMART WD40_4 493 532 IPR001680 GO:0005515
Vium4118g00008 781 SMART WD40_4 535 574 IPR001680 GO:0005515
Vium4118g00008 781 SMART WD40_4 578 618 IPR001680 GO:0005515
Vium4118g00008 781 SMART WD40_4 701 740 IPR001680 GO:0005515
Vium4118g00008 781 SMART WD40_4 622 657 IPR001680 GO:0005515
Vium4118g00008 781 SMART WD40_4 742 781 IPR001680 GO:0005515
Vium4118g00008 781 SMART WD40_4 660 698 IPR001680 GO:0005515
Vium4118g00008 781 MobiDBLite consensus disorder prediction 323 414 - -
Vium4118g00008 781 CDD WD40 496 781 - -
Vium4118g00008 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4118g00008 Vium-Chr4118 140708 149328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4118g00008 582 780 Miscellaneous Gene Families AT5G08390 24.878 6.41e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium4118g00008 WD40 0.015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4118g00008 - - gmx:100786946 1287.32