Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4118g00007 ATGAAGCCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTGCATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAGGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTCCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGCAAACAAAAGTTAGAGAACACCAACAACTTCAAATACAGCAGATGCAGCTAATGCAGCAACGCAATGCACAATTACAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAACTCTGAAGGAATGTTGGGACAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACATCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCACCAAATTCCTGGGCGAACTCCTTTGACCACTGACATAAAAACAGAAGTTAATTTAGGGGCCCCTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCAGGGCTAGGGAGTGCAGGATTAAATCAAGGTGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTCATGTCATCACAACAGCAACAGGTCTTGACTCAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTGAGTGCAAAGGATGGTCAATCTACCAGGAACGATGGATCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGCAGATGAAGATGGCCCAGTCACAACATTCATTATCTCAACAACAGGAGCAATTACAGCAGCATCAACTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTGGAGCTGCCAATAGCACTGGCACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCCTCCAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTATCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCAGCTGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAAGTTAGTAGCATAAGATCGAGGAACAGCAAAGTTACGTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAACATGGACACTTTTAAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTATAGACCAAATTCACTTCAGGTGGCAACTGCCTCAATGGATAAATGTGTGCGGTTATGGGACACAACAAATCCTAACCGCTGTGTACAAGAATATAGTGGGCACTCTTCACCTATAGTGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGCGATGGAGAAAATGAAATTCGGTATTGGAATATTAACTCTCCCAACAGCATGCGAGCAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGACTGGGGCATTTACTAGCAGCAGGTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACAAAAATCTACTCCCTGCAGGGTCATCCTGATCCAGTGAGCTATATTTGCTGGGATGGAAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCGTTCAAGAGATCAGCTCTACTGGAAGCGGATTCCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATTTTCGTGCTTAGAGTTATGGAACATGAGCGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATATCTAGCATGGCTCAGTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTTTGACAACTATGTAAAGGTGTGGAAATAA 2343 0.4213 MKPTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIEQTKVREHQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSINAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLIDANRMALLKSAASHQGQLVHGNSGNMSTALHQIPGRTPLTTDIKTEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKQMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSMMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEVSSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWNMDTFKTENSPAEHKAVITDVRYRPNSLQVATASMDKCVRLWDTTNPNRCVQEYSGHSSPIVSLDFHPKKTELFCFCDGENEIRYWNINSPNSMRATKGGNTQVRFQPRLGHLLAAGSDKGVSIFDVESDTKIYSLQGHPDPVSYICWDGNGEALASVSLNMVKIWSLNSGECVQEISSTGSGFHSCVFHPSYSTLLVIGGFSCLELWNMSENKSMTIPAHENVISSMAQSSVTGMVASASFDNYVKVWK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4118g00007 780 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Vium4118g00007 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Vium4118g00007 780 Coils Coil 349 376 - -
Vium4118g00007 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 780 IPR044716 GO:0003714
Vium4118g00007 780 SMART WD40_4 577 617 IPR001680 GO:0005515
Vium4118g00007 780 SMART WD40_4 659 697 IPR001680 GO:0005515
Vium4118g00007 780 SMART WD40_4 534 573 IPR001680 GO:0005515
Vium4118g00007 780 SMART WD40_4 700 739 IPR001680 GO:0005515
Vium4118g00007 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Vium4118g00007 780 SMART WD40_4 621 656 IPR001680 GO:0005515
Vium4118g00007 780 SMART WD40_4 492 531 IPR001680 GO:0005515
Vium4118g00007 780 Gene3D - 280 625 IPR015943 GO:0005515
Vium4118g00007 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 534 - -
Vium4118g00007 780 SMART Lish 14 46 IPR006594 GO:0005515
Vium4118g00007 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Vium4118g00007 780 MobiDBLite consensus disorder prediction 299 413 - -
Vium4118g00007 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 626 IPR001680 GO:0005515
Vium4118g00007 780 SUPERFAMILY WD40 repeat-like 490 780 IPR036322 GO:0005515
Vium4118g00007 780 Gene3D - 626 780 IPR015943 GO:0005515
Vium4118g00007 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Vium4118g00007 780 CDD WD40 495 780 - -
Vium4118g00007 780 Pfam LisH 16 41 IPR006594 GO:0005515
Vium4118g00007 780 Pfam WD domain, G-beta repeat 543 573 IPR001680 GO:0005515
Vium4118g00007 780 Pfam WD domain, G-beta repeat 504 531 IPR001680 GO:0005515
Vium4118g00007 780 Pfam WD domain, G-beta repeat 579 617 IPR001680 GO:0005515
Vium4118g00007 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Vium4118g00007 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Vium4118g00007 780 MobiDBLite consensus disorder prediction 321 413 - -
Vium4118g00007 780 MobiDBLite consensus disorder prediction 465 488 - -
Vium4118g00007 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4118g00007 Vium-Chr4118 140708 149328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4118g00007 581 779 Miscellaneous Gene Families AT5G08390 24.878 6.13e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vium4118g00007 WD40 0.015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4118g00007 - - gmx:100799686 1282.32