Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4118g00006 ATGGAGAACAACGCACTCAGAGATCGAATCTTTGCGGACAATGAACACGAAGAAATCCCTGATTCATTCGTATGCTGCGTTTGTCTGGATCTATTATACAAACCCATTGTGCTATCATGTGGCCACATATGCTGTTTCTGGTGTGTCTATAATTCCATGAATTGTCTGCGCGAGTCTCAATGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTCCTTAAGATTTATAGTGTTCCTTACAAAAGAAGGGAAGAGCAAACGCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGAGACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTTTTTCCTCCTCTATTGTGAATTTGAAATCCAACTCATGTAATGTGGGAACTTCTGAATGTATGGAGCAATCAGGGTCCACCACCCATGAAAGAGACGAAGGAACAGTCTATTCTAATGGAGAGCCTGATATTGTTGGAACTCCTGCTAAAAGAAAAAAATTGCCTCAGGAAGATATTTCTCTCCAACAAAAATTGTCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTTCTCTTTCATCCTGTAGTTCTTAATTGTGGCCATGTATACTGTCAAACTTGCGTCGTCAACACAGATGACGACATGCTCAGATGCCAGGTTTGTCAAAGTCCACATCCTAGTAGGTTTCCAAAAGTATGTTTGGAGTTAGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAACTAAAGCAGATCAAAGTCAAACTTGAGACACCTTCTTGTTCATTGGACAAGGGTAACAAAGGAGAAAATATAGATTGGTGGTCAGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATAATTGGAGATAGATATAGATGTGCTGATTGTACGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCAACTCGTTCCAAACTCCCGGGTCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAACCTTGAACAATCCAACATTATTCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGGGACACTTCTATTTCTGTAGGAGAGATTGCCTCAGACAGCCCCACTATGTTTGATGATGAAGAAGATAACCACAGTGATTCTGAAACCACCAATTGA 1248 0.4071 MENNALRDRIFADNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQMLHFLLLKIYSVPYKRREEQTLEEEKKSGFYSPQFDPETCESQAKFGHSGIPFSSSIVNLKSNSCNVGTSECMEQSGSTTHERDEGTVYSNGEPDIVGTPAKRKKLPQEDISLQQKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVVNTDDDMLRCQVCQSPHPSRFPKVCLELDHFLEEQFPEEYRQRRDAIELKQIKVKLETPSCSLDKGNKGENIDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFNLEQSNIIHNIMLRLATAQLGDTSISVGEIASDSPTMFDDEEDNHSDSETTN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4118g00006 415 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Vium4118g00006 415 Gene3D - 300 365 IPR043145 -
Vium4118g00006 415 Pfam RING-type zinc-finger 200 234 IPR027370 -
Vium4118g00006 415 SUPERFAMILY RING/U-box 193 257 - -
Vium4118g00006 415 SMART ring_2 200 237 IPR001841 -
Vium4118g00006 415 SMART ring_2 25 64 IPR001841 -
Vium4118g00006 415 SUPERFAMILY RING/U-box 10 75 - -
Vium4118g00006 415 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Vium4118g00006 415 SMART zz_5 306 355 IPR000433 GO:0008270
Vium4118g00006 415 FunFam E3 ubiquitin-protein ligase PRT1 187 282 - -
Vium4118g00006 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 285 IPR013083 -
Vium4118g00006 415 MobiDBLite consensus disorder prediction 150 172 - -
Vium4118g00006 415 ProSiteProfiles Zinc finger ZZ-type profile. 307 371 IPR000433 GO:0008270
Vium4118g00006 415 FunFam E3 ubiquitin-protein ligase PRT1 301 366 - -
Vium4118g00006 415 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Vium4118g00006 415 PANTHER UNCHARACTERIZED 16 405 - -
Vium4118g00006 415 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Vium4118g00006 415 Pfam Zinc finger, ZZ type 308 347 IPR000433 GO:0008270
Vium4118g00006 415 MobiDBLite consensus disorder prediction 394 415 - -
Vium4118g00006 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Vium4118g00006 415 SUPERFAMILY RING/U-box 301 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4118g00006 Vium-Chr4118 98089 114417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4118g00006 23 67 C3H Transcription Factor Family AT2G42030 40.000 5.26e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4118g00006 - - gmx:100782681 751.51