Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4118g00005 ATGGAGAACAACGCACTCAGAGATCGAATCTTTGCGGACAATGAACACGAAGAAATCCCTGATTCATTCGTATGCTGCGTTTGTCTGGATCTATTATACAAACCCATTGTGCTATCATGTGGCCACATATGCTGTTTCTGGTGTGTCTATAATTCCATGAATTGTCTGCGCGAGTCTCAATGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTCCTTAAGATTTATAGTGTTCCTTACAAAAGAAGGGAAGAGCAAACGCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGAGACATGTGAATCACAAGCTAAATTTGGTCATTCTGGGTCCACCACCCATGAAAGAGACGAAGGAACAGTCTATTCTAATGGAGAGCCTGATATTGTTGGAACTCCTGCTAAAAGAAAAAAATTGCCTCAGGAAGATATTTCTCTCCAACAAAAATTGTCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTTCTCTTTCATCCTGTAGTTCTTAATTGTGGCCATGTATACTGTCAAACTTGCGTCGTCAACACAGATGACGACATGCTCAGATGCCAGGTTTGTCAAAGTCCACATCCTAGTAGGTTTCCAAAAGTATGTTTGGAGTTAGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAACTAAAGCAGATCAAAGTCAAACTTGAGACACCTTCTTGTTCATTGGACAAGGGTAACAAAGGAGAAAATATAGATTGGTGGTCAGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATAATTGGAGATAGATATAGATGTGCTGATTGTACGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCAACTCGTTCCAAACTCCCGGGTCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAACCTTGAACAATCCAACATTATTCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGGGACACTTCTATTTCTGTAGGAGAGATTGCCTCAGACAGCCCCACTATGTTTGATGATGAAGAAGATAACCACAGTGATTCTGAAACCACCAATTGA 1167 0.4087 MENNALRDRIFADNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQMLHFLLLKIYSVPYKRREEQTLEEEKKSGFYSPQFDPETCESQAKFGHSGSTTHERDEGTVYSNGEPDIVGTPAKRKKLPQEDISLQQKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVVNTDDDMLRCQVCQSPHPSRFPKVCLELDHFLEEQFPEEYRQRRDAIELKQIKVKLETPSCSLDKGNKGENIDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFNLEQSNIIHNIMLRLATAQLGDTSISVGEIASDSPTMFDDEEDNHSDSETTN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4118g00005 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 132 IPR013083 -
Vium4118g00005 388 ProSitePatterns Zinc finger RING-type signature. 188 197 IPR017907 -
Vium4118g00005 388 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Vium4118g00005 388 MobiDBLite consensus disorder prediction 367 388 - -
Vium4118g00005 388 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Vium4118g00005 388 SMART ring_2 173 210 IPR001841 -
Vium4118g00005 388 SMART ring_2 25 64 IPR001841 -
Vium4118g00005 388 SUPERFAMILY RING/U-box 274 336 - -
Vium4118g00005 388 ProSiteProfiles Zinc finger ZZ-type profile. 280 344 IPR000433 GO:0008270
Vium4118g00005 388 Pfam Zinc finger, ZZ type 281 320 IPR000433 GO:0008270
Vium4118g00005 388 MobiDBLite consensus disorder prediction 117 143 - -
Vium4118g00005 388 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Vium4118g00005 388 FunFam E3 ubiquitin-protein ligase PRT1 274 339 - -
Vium4118g00005 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 258 IPR013083 -
Vium4118g00005 388 FunFam E3 ubiquitin-protein ligase PRT1 160 255 - -
Vium4118g00005 388 PANTHER UNCHARACTERIZED 16 378 - -
Vium4118g00005 388 Gene3D - 273 338 IPR043145 -
Vium4118g00005 388 SUPERFAMILY RING/U-box 166 230 - -
Vium4118g00005 388 SUPERFAMILY RING/U-box 10 75 - -
Vium4118g00005 388 SMART zz_5 279 328 IPR000433 GO:0008270
Vium4118g00005 388 Pfam RING-type zinc-finger 173 207 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4118g00005 Vium-Chr4118 98089 114417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4118g00005 23 105 C3H Transcription Factor Family AT2G42030 31.183 5.37e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4118g00005 - - gmx:100782681 691.034