Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4117g00005 ATGAAATCTAATGTCCATATGAGGCGTGTTTACACCAAGAAGAGTATGACAGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAAGCTCGGCTTCTTGTATTTTACATTAAAAAACTATATGCTGATGAGAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGGTTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCACCCATACCGTTCACTATCTCCGTTGCTTCAGGATGCAGGTTTGAATGATCTGAACATGACTCAGTTAACTTGGGGCCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATACATTGCTAGTGTACTTAGGGACAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGACATGAACGTGGTCAAAAATATATCAATGGAGATACTTGATTTTTATGAGAGCCATAGAATGTTCACTGAGGAAAGAATTAATGCTGCTCTCCAGAAGTTGACCTTGAGACCCTAA 576 0.3889 MKSNVHMRRVYTKKSMTEYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKLYADEKYRYEIKDILEMEMKVLEALNYYLVVYHPYRSLSPLLQDAGLNDLNMTQLTWGLVNDTYKMDLILVHPPHLIALACIYIASVLRDKDTTAWFEELRVDMNVVKNISMEILDFYESHRMFTEERINAALQKLTLRP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4117g00005 191 PANTHER CYCLIN 4 177 IPR043198 GO:0006357|GO:0016538
Vium4117g00005 191 Gene3D - 82 175 - -
Vium4117g00005 191 Gene3D - 2 81 - -
Vium4117g00005 191 SUPERFAMILY Cyclin-like 5 82 IPR036915 -
Vium4117g00005 191 Pfam Cyclin, N-terminal domain 6 80 IPR006671 -
Vium4117g00005 191 SMART cyclin_7 87 167 IPR013763 -
Vium4117g00005 191 SMART cyclin_7 1 74 IPR013763 -
Vium4117g00005 191 SUPERFAMILY Cyclin-like 84 180 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4117g00005 Vium-Chr4117 97671 112135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4117g00005 6 137 Core Cell Cycle Gene Families AT5G27620 28.873 6.25e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4117g00005 K15161 - gmx:100816019 359.377