Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4114g00006 ATGGCGCAAGATATTGGTACTCCACCAGTTCCTTTTGATTTTGAACTCTTGGTTGGTGATCCTGAGAACCTTAGAACTGTCAAAGCCTCATCCAGCAGCACGGACCCATGGATTGAACCTGAAAGGCTGAAACTTAGACACAGAATTGGTAGAGGCATCTTTGGTGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTATGATGAGTATCATGAAGTTGCTGCAAAGATGCTACCCCCTATCAGAGAGGAACATATGAAGACTGCATTAGAGAAATTTTTTGAGTTATATTTTCAGTGCCAAGGAGCGGCTAGGGTGTTTTGGCTACTTGGGATTTCAATTTTAAATGGAAGGATATGCATCATTATGAATTTTTATGAGGGATCGGTTGGTGATAAGATGGCTAGACTCAGAGAGGGAAGGATTTCATTGCCTGATGTTCTTAGGTATGGTATCGATCTGGCTCAAGGTATTCTTGAACTTCACTCAAAAGGGATCCTAGTTCTCAACCTTAAACCATCCAACGTGCTTCTCAAAGATACTGATCAAGCAATACTGGGAGATGTTGGTATTCCAAATATTCTCTTTGGTTCCTCATTCCTAAGCTCAGATACTGCCAATAGGCTTGGTACTCCAAATTACATGGCTCCAGAACAATGGCAACCAGAAGTCAGAGGCCCTGTATCCTTTGAAACAGATTCATGGGGGTTTGGGTGTACTATTGTGGAAATGTTGGTTGGTAACCAACCTTGGTATGGGTGTCCTGTTGGTGAAGTATATCGATCAGTTGTTGAAAATTATGAAAAACCCCAGATTCCTGGTGGCCTTCCTTCTTCAGTTGAAAATGTCCTCAGTGGCTGCTTTGAATATGACTTGAGGAATCGCCCTTCAATGGTAGATATTCTGTCTGTCTTTAGAAGCGCACGGAATGCAATGGTCAACGATGGAGGATGGAGATATCTTGGAATTCACAAAACATTAGAAAAATCAAGTAGCACGGGCTACACACAGTGGTCCCTCTCAAAGGATCATCTTCAGGTGGGCGATACCGTGCGCTCTAGAAAGCCTTCCAATTCATGCAATCCACAGAACATGGAGGTCCCAGAAGGAAATGTTGTCGGCAATGCAGATCATGGATTTGTTTTAGTGAGGCTCCATGGAGTTCATGACCCTGTAAGGATTCATGCGTCAACTCTTGAACGTGTCACCAATGGTTTAGGAGCCGGGGATTGGGTGCGCATTAAGGAAGAAGATGATAAACACTCGCCAGTGGGTATTCTTCATTCTATCAATCGTGAGGGCAGAGTGACTGTTGGATTTATAGGCCTACGAACTCTTTGGAAAGGAAACTGTTCAGAACTTGAAATGGCAGAGTCTTACTGTGTGGGGCAATTTATTAGGCTGAAACCCAATGTTCTAAGTCCCCGGTTTGAATGGTTGCGTAGAAGGGGAGGTACCTGGGCTACTGCTAAGATTTCTTGGATCCTACCAAATGGATGTCTGGTTGTCAAGTTCCCTGGCATGTTGAACATCTGGAATGCACCAAACACTTATTTGGCTGATCCCTCTGAGGTTGATGTGGTTAGTTTTAAGAATTGTCCAAATATGATAGAAAAGTATCAACATGTTGAGGATCACCACTGGGCAATTAGACCTGTTCTAATTGCATTTGGCCTTCTTAGCACTGTTAAACTAGGGATTTCAGTTGGAAAAAAAATTGGCAGGAACATGAATGTGAATGCAATGGAGAATGAAAATCATTATACTGATAGCCAGAATGCTAGCAGCCCTACATCTACATGGAAATCTTCAGTAGCTAACATCCTTTTCAGAGAAGGTAGTTAA 1851 0.4268 MAQDIGTPPVPFDFELLVGDPENLRTVKASSSSTDPWIEPERLKLRHRIGRGIFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTALEKFFELYFQCQGAARVFWLLGISILNGRICIIMNFYEGSVGDKMARLREGRISLPDVLRYGIDLAQGILELHSKGILVLNLKPSNVLLKDTDQAILGDVGIPNILFGSSFLSSDTANRLGTPNYMAPEQWQPEVRGPVSFETDSWGFGCTIVEMLVGNQPWYGCPVGEVYRSVVENYEKPQIPGGLPSSVENVLSGCFEYDLRNRPSMVDILSVFRSARNAMVNDGGWRYLGIHKTLEKSSSTGYTQWSLSKDHLQVGDTVRSRKPSNSCNPQNMEVPEGNVVGNADHGFVLVRLHGVHDPVRIHASTLERVTNGLGAGDWVRIKEEDDKHSPVGILHSINREGRVTVGFIGLRTLWKGNCSELEMAESYCVGQFIRLKPNVLSPRFEWLRRRGGTWATAKISWILPNGCLVVKFPGMLNIWNAPNTYLADPSEVDVVSFKNCPNMIEKYQHVEDHHWAIRPVLIAFGLLSTVKLGISVGKKIGRNMNVNAMENENHYTDSQNASSPTSTWKSSVANILFREGS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4114g00006 616 Gene3D Transferase(Phosphotransferase) domain 1 129 344 - -
Vium4114g00006 616 Gene3D Phosphorylase Kinase; domain 1 20 128 - -
Vium4114g00006 616 PANTHER OS06G0639500 PROTEIN 7 615 - -
Vium4114g00006 616 Pfam Protein tyrosine and serine/threonine kinase 43 305 IPR001245 GO:0004672|GO:0006468
Vium4114g00006 616 CDD STKc_PknB_like 44 309 - -
Vium4114g00006 616 ProSitePatterns Protein kinases ATP-binding region signature. 49 78 IPR017441 GO:0005524
Vium4114g00006 616 SUPERFAMILY Protein kinase-like (PK-like) 40 309 IPR011009 -
Vium4114g00006 616 ProSiteProfiles Protein kinase domain profile. 43 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4114g00006 Vium-Chr4114 60326 64541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4114g00006 27 308 MAP Kinase Kinase Kinase AT2G17700 24.126 1.57e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vium4114g00006 PK_Tyr_Ser-Thr 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4114g00006 - - gmx:100780636 1113.98