Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4112g00016 ATGGCAGAAGATGCATCAAGCACTGATTCCACTATTCCAACCCACACAAAAGCTTGGTACTACTCTCAACATGGTAGACCCGCTGATGTTCTAAAGGTTGATCCTAATTGGCCCTTACCACAACTCAAAGATGATCAAGTGATCATCAAGGTCATAGCAGTATCCCTTAATCCAGTTGATTACAAGAGGATACATGGGGAGTTCAAGGACACTGACTCTTATCTACCTATTGTGCCTGGTTTTGATGTTGCTGGCATAGTGGTAAAAGTGGGAGGAGAAGTGAGGAAATTTAAGGTTGGAGATGAAGTATATGGTGATATCAACGAGGAAGGTTTGTCGAATCTTAAGATTCTTGGAACTTTGTCAGAGTATACTGTTGCAGAAGAGAAACTATTGGCTCATAAACCATCCAATCTAAGCTTCATTGAAGCTGCTAGCATTCCTTTGGCACTTGAGACTGCCCTTGAAGGTTTTGAGCATGCTCAGTTTTCTGCTGGCAAATCTATCCTTGTTTTGGGAGGAGCTGGTGGAGTTGGAAGCTATGCCATTCAGCTCGCCAAACATGTTTATAAGGCATCGAAGATAGCAGCAACTGCAAGCACAGGCAAACTTGAACTTCTAAGGGAGATAGGAGTAGACTTTCCTATTGATTATACAAAGTACAACTTTGAAGATCTTCCAGACAAATATGATCTGGTGTATGATGCAGTAGGGCAGACTGACAGAGCCTTTAAGGCCATTAAAGAAGGTGGAAAAGTTGTGACAATAGTGCCACCTGGATATCCACCAGCAATCTTTTTTGCGCTAACTTCAAAAGGATCAAACTTAGAGAAATTGAGACCTTACTTTGAGAGTGGTCAAGTGAAGCCTATACTTGATGCCAAGACTCCATTGCCATTTTCTCAGCTTATTGAAGCCATTTCCTACTTAGAAACTTCAAGAGCCACAGGAAAAGTGGTCGTTTATCCCATTCCCTGA 978 0.4202 MAEDASSTDSTIPTHTKAWYYSQHGRPADVLKVDPNWPLPQLKDDQVIIKVIAVSLNPVDYKRIHGEFKDTDSYLPIVPGFDVAGIVVKVGGEVRKFKVGDEVYGDINEEGLSNLKILGTLSEYTVAEEKLLAHKPSNLSFIEAASIPLALETALEGFEHAQFSAGKSILVLGGAGGVGSYAIQLAKHVYKASKIAATASTGKLELLREIGVDFPIDYTKYNFEDLPDKYDLVYDAVGQTDRAFKAIKEGGKVVTIVPPGYPPAIFFALTSKGSNLEKLRPYFESGQVKPILDAKTPLPFSQLIEAISYLETSRATGKVVVYPIP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4112g00016 325 Gene3D - 158 272 - -
Vium4112g00016 325 Pfam Zinc-binding dehydrogenase 211 321 - -
Vium4112g00016 325 CDD MDR_like_2 17 321 - -
Vium4112g00016 325 Gene3D - 23 321 - -
Vium4112g00016 325 Pfam Alcohol dehydrogenase GroES-like domain 45 106 IPR013154 -
Vium4112g00016 325 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 166 187 IPR002364 GO:0008270|GO:0016491
Vium4112g00016 325 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 8 325 IPR044626 GO:0016628
Vium4112g00016 325 SMART PKS_ER_names_mod 25 321 IPR020843 GO:0016491
Vium4112g00016 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 139 265 IPR036291 -
Vium4112g00016 325 SUPERFAMILY GroES-like 12 171 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4112g00016 Vium-Chr4112 80760 82770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4112g00016 72 103 Monolignol Biosynthesis Gene Families AT1G72680 62.500 8.32e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4112g00016 K18980 - gmx:100788619 563.148