Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4109g00001 ATGCTGAAGAAAGGTGTTGAGGTTGTAAACAGAGAAGGTCTTGAGGTTACTGATGATGTGTCAATTGTTGAGCACCTTAAGCATCCTGTTTATATCAATGAAGGATCTCATACCAAGATTAAGGTTGGTACTCTAAGTTACATGTCACCAGAAGCCTTTATGTGCAATGAGAGTGATGCGAGTGGAAGCATCATGAAGTGTGGTCGGCCATCAGATATCTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGGAGAACACCCTTTTCAGAATACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCCAATCACGAAATTATGTACGAACCAGTTTCAAATCCTTGGCTTCTTGATCTTATGAAAAAGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGTTGCTCCAGCATCCTTTTTTAGTTCCCCCAGTTCCATGTCATCAATCTTTGTTCCAAGATCAAACCTTTAAATTGCTGCAACTTATAGCTGAAACTTGCAAAAATGACCCAGAAGCATCGCAGCTCTGTTTTCAACTTCAACAGGTGCTTGATAATCCCATAAAATTAACTAGTACTCATTCATTAAACTCCCTAGACCAACAGCATAAATTACTGTCCCGAATATCAGAACTTTGTATTCAACTACAGAAACGCTTTCCAAATTCGGATGAAGAATAG 699 0.3934 MLKKGVEVVNREGLEVTDDVSIVEHLKHPVYINEGSHTKIKVGTLSYMSPEAFMCNESDASGSIMKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEIMYEPVSNPWLLDLMKKCLAWDRNERWRIPQLLQHPFLVPPVPCHQSLFQDQTFKLLQLIAETCKNDPEASQLCFQLQQVLDNPIKLTSTHSLNSLDQQHKLLSRISELCIQLQKRFPNSDEE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4109g00001 232 SMART serkin_6 3 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4109g00001 232 SUPERFAMILY Protein kinase-like (PK-like) 38 161 IPR011009 -
Vium4109g00001 232 Gene3D Transferase(Phosphotransferase) domain 1 19 150 - -
Vium4109g00001 232 Pfam Protein kinase domain 33 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4109g00001 232 ProSiteProfiles Protein kinase domain profile. 1 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4109g00001 232 PANTHER MIXED LINEAGE PROTEIN KINASE 38 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4109g00001 Vium-Chr4109 38120 40102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4109g00001 43 148 MAP Kinase Kinase Kinase AT4G08470 34.862 1.10e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vium4109g00001 Pkinase 2.5e-18 CL0016