Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium40g00001 ATGAACAACACCCTCATCACAGAGCTTCTTCTCGGTCTCGACTATGCCACTCAGCTCAAGTTTCTGCTTCAGAAACCTGTTGACCCAGATGCCTCTGCTGCAGCTAAGGAACTGCTCACCAATGTGCACAGATCTTTCGCTCAAACTCTCTCTATCTTGACTTCTTCCCACCCTGCAATGCCTCAAGACCAGCTTGCTCAGAATCTCCTCATTTCTGGGGAAGATGCCTCGCAGGCTGCAAGCATTGATCCCAGGTCTGACGATTCATCTGAGAGTAGAAAGAGATCGTTTCCCCTCTCAAAGGATCGCAGAGGTTCCTACAAACGAAGGAAGACTGAACAGACATGGGCTATAGTTTCCCAAACTACTGTAGATGATCATGCGTGGAGAAAGTACGGACAAAAGGATATTCTAAATTCTCAGTTTCCCAGGAGTTACTTCAGATGCACTAGGAAGTTTGAACAAGGTTGCAAGGCCACCAAACAAGTGCAACGGTTAGAAGAGAATCCTGATATGTACAATATTACGTACATTGGGTTTCACACATGCAAAGACACCCTCAAGGCTCCACAAATGGTCACATGTTCTGAAACTTGGGACTCATTTCTTGAGAATTCCCACGAAGATTTAAATGTTCCAAATGAACAAAAACAACTCGATCCTCCTGTGAGATCACAAAGCCCAATTGTTAAACAAGAATGTCTCAATGATGAGACTGATCCCAGTGATCTTTCAGATGCCAACCTGTGGTCTGATTTGAAGGATTTTGAACTGTCCAGTGACAAGCCTGACTTGAAAATATCATCGCATTCATGTACTTGCTCTCGGAGTTTGGACATGAATTTTGATGCGTTTTCTCATCATTAG 867 0.4406 MNNTLITELLLGLDYATQLKFLLQKPVDPDASAAAKELLTNVHRSFAQTLSILTSSHPAMPQDQLAQNLLISGEDASQAASIDPRSDDSSESRKRSFPLSKDRRGSYKRRKTEQTWAIVSQTTVDDHAWRKYGQKDILNSQFPRSYFRCTRKFEQGCKATKQVQRLEENPDMYNITYIGFHTCKDTLKAPQMVTCSETWDSFLENSHEDLNVPNEQKQLDPPVRSQSPIVKQECLNDETDPSDLSDANLWSDLKDFELSSDKPDLKISSXHSCTCSRSLDMNFDAFSHH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium40g00001 289 Gene3D WRKY domain 109 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium40g00001 289 MobiDBLite consensus disorder prediction 86 104 - -
Vium40g00001 289 MobiDBLite consensus disorder prediction 76 104 - -
Vium40g00001 289 Pfam WRKY DNA -binding domain 125 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium40g00001 289 ProSiteProfiles WRKY domain profile. 125 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium40g00001 289 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 206 IPR044810 GO:0003700
Vium40g00001 289 MobiDBLite consensus disorder prediction 206 228 - -
Vium40g00001 289 SUPERFAMILY WRKY DNA-binding domain 121 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium40g00001 289 SMART WRKY_cls 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium40g00001 Vium-Chr40 17515 19759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium40g00001 5 224 WRKY Transcription Factor Family AT3G56400 40.359 8.57e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium40g00001 DUF19 5.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium40g00001 - - vun:114164744 455.677